Hb_001706_020

Information

Type -
Description -
Location Contig1706: 25991-38609
Sequence    

Annotation

kegg
ID rcu:RCOM_1573270
description sugar transporter, putative
nr
ID XP_012087281.1
description PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
swissprot
ID Q940M4
description Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1
trembl
ID A0A067JM06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22561 PE=4 SV=1
Gene Ontology
ID GO:0005622
description organic cation carnitine transporter 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15943: 26108-38593 , PASA_asmbl_15944: 37510-37845 , PASA_asmbl_15945: 32590-33496
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001706_020 0.0 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
2 Hb_000215_290 0.0695559073 transcription factor TF Family: NAC PREDICTED: protein BEARSKIN2 isoform X2 [Jatropha curcas]
3 Hb_001174_030 0.0740886786 - - unnamed protein product [Vitis vinifera]
4 Hb_005488_030 0.0850012297 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
5 Hb_143629_200 0.0862125034 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
6 Hb_001544_070 0.0916246412 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
7 Hb_000472_020 0.0937132089 - - PREDICTED: uncharacterized protein LOC105641103 [Jatropha curcas]
8 Hb_144703_010 0.0962794468 - - Phospholipase A 2A, IIA,PLA2A [Theobroma cacao]
9 Hb_026144_030 0.1000069995 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
10 Hb_019496_040 0.1011188556 - - kinase family protein [Populus trichocarpa]
11 Hb_002010_070 0.1020137924 - - hypothetical protein EUGRSUZ_I027342, partial [Eucalyptus grandis]
12 Hb_001143_140 0.1024722253 - - Aldehyde dehydrogenase, putative [Ricinus communis]
13 Hb_010880_010 0.1064325262 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
14 Hb_001153_090 0.1074477301 - - PREDICTED: protein FAM63A [Jatropha curcas]
15 Hb_000025_590 0.1118555535 - - PREDICTED: cytochrome P450 94A1-like isoform X1 [Jatropha curcas]
16 Hb_005034_010 0.1124074288 - - alcohol dehydrogenase, putative [Ricinus communis]
17 Hb_001956_080 0.1128871809 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 14 [Jatropha curcas]
18 Hb_000614_190 0.113082211 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
19 Hb_002902_070 0.114672967 - - PREDICTED: BTB/POZ domain-containing protein At5g67385 [Jatropha curcas]
20 Hb_000069_540 0.1164180161 - - PREDICTED: hydroquinone glucosyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_001706_020 Hb_001706_020 Hb_000215_290 Hb_000215_290 Hb_001706_020--Hb_000215_290 Hb_001174_030 Hb_001174_030 Hb_001706_020--Hb_001174_030 Hb_005488_030 Hb_005488_030 Hb_001706_020--Hb_005488_030 Hb_143629_200 Hb_143629_200 Hb_001706_020--Hb_143629_200 Hb_001544_070 Hb_001544_070 Hb_001706_020--Hb_001544_070 Hb_000472_020 Hb_000472_020 Hb_001706_020--Hb_000472_020 Hb_144703_010 Hb_144703_010 Hb_000215_290--Hb_144703_010 Hb_000025_590 Hb_000025_590 Hb_000215_290--Hb_000025_590 Hb_000215_290--Hb_143629_200 Hb_000215_290--Hb_001174_030 Hb_000215_290--Hb_005488_030 Hb_001174_030--Hb_001544_070 Hb_005034_010 Hb_005034_010 Hb_001174_030--Hb_005034_010 Hb_174101_010 Hb_174101_010 Hb_001174_030--Hb_174101_010 Hb_001174_030--Hb_000472_020 Hb_003562_040 Hb_003562_040 Hb_001174_030--Hb_003562_040 Hb_001956_080 Hb_001956_080 Hb_005488_030--Hb_001956_080 Hb_007747_100 Hb_007747_100 Hb_005488_030--Hb_007747_100 Hb_001153_090 Hb_001153_090 Hb_005488_030--Hb_001153_090 Hb_023344_130 Hb_023344_130 Hb_005488_030--Hb_023344_130 Hb_002010_070 Hb_002010_070 Hb_143629_200--Hb_002010_070 Hb_144449_010 Hb_144449_010 Hb_143629_200--Hb_144449_010 Hb_000868_130 Hb_000868_130 Hb_143629_200--Hb_000868_130 Hb_000959_010 Hb_000959_010 Hb_143629_200--Hb_000959_010 Hb_001544_070--Hb_174101_010 Hb_004122_060 Hb_004122_060 Hb_001544_070--Hb_004122_060 Hb_001544_070--Hb_000472_020 Hb_000092_030 Hb_000092_030 Hb_001544_070--Hb_000092_030 Hb_000613_250 Hb_000613_250 Hb_000472_020--Hb_000613_250 Hb_000472_020--Hb_144703_010 Hb_000472_020--Hb_174101_010 Hb_000342_020 Hb_000342_020 Hb_000472_020--Hb_000342_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.158076 45.6983 30.2423 50.7334 0.0478423 0.101486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.435318 0.144219 0.102519 34.9469 58.3049

CAGE analysis