Hb_144449_010

Information

Type -
Description -
Location Contig144449: 19480-20985
Sequence    

Annotation

kegg
ID rcu:RCOM_0892310
description Potassium transporter, putative
nr
ID XP_002523651.1
description Potassium transporter, putative [Ricinus communis]
swissprot
ID O64769
description Potassium transporter 11 OS=Arabidopsis thaliana GN=POT11 PE=2 SV=1
trembl
ID B9SCD2
description Potassium transporter OS=Ricinus communis GN=RCOM_0892310 PE=3 SV=1
Gene Ontology
ID GO:0016021
description potassium transporter 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11663: 19468-20985
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_144449_010 0.0 - - Potassium transporter, putative [Ricinus communis]
2 Hb_000473_100 0.0770731186 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
3 Hb_003266_010 0.0868989275 - - hypothetical protein JCGZ_21945 [Jatropha curcas]
4 Hb_010557_020 0.0870165919 - - Mlo protein [Hevea brasiliensis]
5 Hb_004607_160 0.0882601111 - - PREDICTED: uncharacterized protein LOC105134931 [Populus euphratica]
6 Hb_152980_020 0.0932251746 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
7 Hb_000856_200 0.0946140885 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
8 Hb_010222_040 0.0975181803 - - PREDICTED: kinesin-2 [Jatropha curcas]
9 Hb_000868_130 0.0991983497 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
10 Hb_002095_020 0.1001106821 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
11 Hb_000162_200 0.1009336109 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
12 Hb_143629_200 0.1055958161 - - hypothetical protein POPTR_0013s00300g [Populus trichocarpa]
13 Hb_003607_140 0.1099868474 - - 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
14 Hb_000290_030 0.1116204796 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
15 Hb_000836_030 0.1125479492 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
16 Hb_001046_030 0.113458371 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_001269_400 0.1178509498 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
18 Hb_000318_010 0.1186278877 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
19 Hb_007894_080 0.119132757 - - conserved hypothetical protein [Ricinus communis]
20 Hb_017358_020 0.1204232464 - - hypothetical protein POPTR_0014s16490g [Populus trichocarpa]

Gene co-expression network

sample Hb_144449_010 Hb_144449_010 Hb_000473_100 Hb_000473_100 Hb_144449_010--Hb_000473_100 Hb_003266_010 Hb_003266_010 Hb_144449_010--Hb_003266_010 Hb_010557_020 Hb_010557_020 Hb_144449_010--Hb_010557_020 Hb_004607_160 Hb_004607_160 Hb_144449_010--Hb_004607_160 Hb_152980_020 Hb_152980_020 Hb_144449_010--Hb_152980_020 Hb_000856_200 Hb_000856_200 Hb_144449_010--Hb_000856_200 Hb_000868_130 Hb_000868_130 Hb_000473_100--Hb_000868_130 Hb_002902_040 Hb_002902_040 Hb_000473_100--Hb_002902_040 Hb_000069_540 Hb_000069_540 Hb_000473_100--Hb_000069_540 Hb_001269_400 Hb_001269_400 Hb_000473_100--Hb_001269_400 Hb_000473_100--Hb_000856_200 Hb_003266_010--Hb_000868_130 Hb_002095_020 Hb_002095_020 Hb_003266_010--Hb_002095_020 Hb_003266_010--Hb_000473_100 Hb_017358_020 Hb_017358_020 Hb_003266_010--Hb_017358_020 Hb_001046_030 Hb_001046_030 Hb_003266_010--Hb_001046_030 Hb_000290_030 Hb_000290_030 Hb_010557_020--Hb_000290_030 Hb_010557_020--Hb_000856_200 Hb_010222_040 Hb_010222_040 Hb_010557_020--Hb_010222_040 Hb_010557_020--Hb_000473_100 Hb_000162_200 Hb_000162_200 Hb_010557_020--Hb_000162_200 Hb_000836_030 Hb_000836_030 Hb_004607_160--Hb_000836_030 Hb_000130_480 Hb_000130_480 Hb_004607_160--Hb_000130_480 Hb_002635_010 Hb_002635_010 Hb_004607_160--Hb_002635_010 Hb_005332_050 Hb_005332_050 Hb_004607_160--Hb_005332_050 Hb_007850_110 Hb_007850_110 Hb_004607_160--Hb_007850_110 Hb_005545_110 Hb_005545_110 Hb_152980_020--Hb_005545_110 Hb_002685_160 Hb_002685_160 Hb_152980_020--Hb_002685_160 Hb_152980_020--Hb_001269_400 Hb_014361_040 Hb_014361_040 Hb_152980_020--Hb_014361_040 Hb_152980_020--Hb_010222_040 Hb_000856_200--Hb_010222_040 Hb_000856_200--Hb_000290_030 Hb_000856_200--Hb_001046_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.169616 4.97153 7.67114 13.8916 0.101634 0.2513
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0673145 0.0529562 0.0496185 6.40018 12.7046

CAGE analysis