Hb_007850_110

Information

Type -
Description -
Location Contig7850: 108412-109790
Sequence    

Annotation

kegg
ID rcu:RCOM_1468080
description mads box protein, putative (EC:1.3.1.74)
nr
ID ACZ36916.1
description MADS-box transcription factor 3 [Hevea brasiliensis]
swissprot
ID Q42429
description Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1
trembl
ID D1MFS8
description MADS-box transcription factor 3 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005634
description mads box

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58093: 108479-108877
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007850_110 0.0 - - MADS-box transcription factor 3 [Hevea brasiliensis]
2 Hb_006469_090 0.0828598476 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]
3 Hb_017098_050 0.0844360573 - - hypothetical protein POPTR_0001s03540g [Populus trichocarpa]
4 Hb_001109_130 0.0892209464 - - PREDICTED: coiled-coil domain-containing protein 136 isoform X1 [Jatropha curcas]
5 Hb_002635_010 0.0904511284 - - homogentisate phytyl transferase [Hevea brasiliensis]
6 Hb_004607_160 0.0904916035 - - PREDICTED: uncharacterized protein LOC105134931 [Populus euphratica]
7 Hb_000130_480 0.0972255645 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
8 Hb_004943_010 0.1001022412 - - cationic amino acid transporter, putative [Ricinus communis]
9 Hb_000776_020 0.1036513256 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]
10 Hb_000866_190 0.1093790264 - - transcription factor, putative [Ricinus communis]
11 Hb_000258_210 0.1094219936 - - prenyl-dependent CAAX protease, putative [Ricinus communis]
12 Hb_005332_050 0.1155350674 - - hypothetical protein POPTR_0017s10650g [Populus trichocarpa]
13 Hb_000380_140 0.1158990529 - - PREDICTED: uncharacterized protein LOC105628069 [Jatropha curcas]
14 Hb_014967_020 0.1190082475 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_124579_020 0.1192773836 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
16 Hb_000337_030 0.1204263474 - - amino acid transporter, putative [Ricinus communis]
17 Hb_020805_070 0.1227537374 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
18 Hb_167211_010 0.1229180446 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
19 Hb_170023_010 0.1235671608 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
20 Hb_010311_020 0.1252919857 - - lrr receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007850_110 Hb_007850_110 Hb_006469_090 Hb_006469_090 Hb_007850_110--Hb_006469_090 Hb_017098_050 Hb_017098_050 Hb_007850_110--Hb_017098_050 Hb_001109_130 Hb_001109_130 Hb_007850_110--Hb_001109_130 Hb_002635_010 Hb_002635_010 Hb_007850_110--Hb_002635_010 Hb_004607_160 Hb_004607_160 Hb_007850_110--Hb_004607_160 Hb_000130_480 Hb_000130_480 Hb_007850_110--Hb_000130_480 Hb_001439_010 Hb_001439_010 Hb_006469_090--Hb_001439_010 Hb_000866_190 Hb_000866_190 Hb_006469_090--Hb_000866_190 Hb_003607_140 Hb_003607_140 Hb_006469_090--Hb_003607_140 Hb_005663_090 Hb_005663_090 Hb_006469_090--Hb_005663_090 Hb_000680_070 Hb_000680_070 Hb_006469_090--Hb_000680_070 Hb_017098_050--Hb_001109_130 Hb_005496_170 Hb_005496_170 Hb_017098_050--Hb_005496_170 Hb_010880_010 Hb_010880_010 Hb_017098_050--Hb_010880_010 Hb_000776_020 Hb_000776_020 Hb_017098_050--Hb_000776_020 Hb_004943_010 Hb_004943_010 Hb_017098_050--Hb_004943_010 Hb_001109_130--Hb_010880_010 Hb_000258_210 Hb_000258_210 Hb_001109_130--Hb_000258_210 Hb_001109_130--Hb_004943_010 Hb_001109_130--Hb_005496_170 Hb_002635_010--Hb_000130_480 Hb_000380_140 Hb_000380_140 Hb_002635_010--Hb_000380_140 Hb_002635_010--Hb_004607_160 Hb_124579_020 Hb_124579_020 Hb_002635_010--Hb_124579_020 Hb_003142_080 Hb_003142_080 Hb_002635_010--Hb_003142_080 Hb_000836_030 Hb_000836_030 Hb_004607_160--Hb_000836_030 Hb_004607_160--Hb_000130_480 Hb_144449_010 Hb_144449_010 Hb_004607_160--Hb_144449_010 Hb_005332_050 Hb_005332_050 Hb_004607_160--Hb_005332_050 Hb_006198_040 Hb_006198_040 Hb_000130_480--Hb_006198_040 Hb_000130_480--Hb_124579_020 Hb_000130_480--Hb_003142_080 Hb_000130_480--Hb_000836_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.187947 13.2421 29.8304 32.2556 0.191555 0.0800609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.229222 0.180117 0.155431 40.8489 53.4267

CAGE analysis