Hb_000776_020

Information

Type transcription factor
Description TF Family: M-type
Location Contig776: 6078-6776
Sequence    

Annotation

kegg
ID csv:101232522
description agamous-like MADS-box protein AGL8-like
nr
ID KDP24298.1
description hypothetical protein JCGZ_25594 [Jatropha curcas]
swissprot
ID Q84NC2
description MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1
trembl
ID A0A067JND4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25594 PE=4 SV=1
Gene Ontology
ID GO:0003677
description fruitfull-like partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000776_020 0.0 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]
2 Hb_001301_010 0.0754100407 - - receptor protein kinase, putative [Ricinus communis]
3 Hb_007850_110 0.1036513256 - - MADS-box transcription factor 3 [Hevea brasiliensis]
4 Hb_000416_010 0.1045718347 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
5 Hb_017098_050 0.1046767429 - - hypothetical protein POPTR_0001s03540g [Populus trichocarpa]
6 Hb_000442_170 0.1068979415 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
7 Hb_001109_130 0.1132684309 - - PREDICTED: coiled-coil domain-containing protein 136 isoform X1 [Jatropha curcas]
8 Hb_007205_020 0.1156947746 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
9 Hb_124579_020 0.1157961992 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
10 Hb_010311_020 0.116658261 - - lrr receptor protein kinase, putative [Ricinus communis]
11 Hb_000147_020 0.1222267521 - - PREDICTED: uncharacterized protein LOC105638303 [Jatropha curcas]
12 Hb_031201_010 0.1269527528 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
13 Hb_002635_010 0.1273014738 - - homogentisate phytyl transferase [Hevea brasiliensis]
14 Hb_000130_480 0.127425942 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
15 Hb_000640_330 0.1275669805 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002845_020 0.127734378 - - hypothetical protein POPTR_0012s14920g [Populus trichocarpa]
17 Hb_003992_220 0.1281863861 - - s-receptor kinase, putative [Ricinus communis]
18 Hb_004324_320 0.1315079559 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
19 Hb_001963_110 0.1324386021 - - -
20 Hb_007035_010 0.1372476695 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000776_020 Hb_000776_020 Hb_001301_010 Hb_001301_010 Hb_000776_020--Hb_001301_010 Hb_007850_110 Hb_007850_110 Hb_000776_020--Hb_007850_110 Hb_000416_010 Hb_000416_010 Hb_000776_020--Hb_000416_010 Hb_017098_050 Hb_017098_050 Hb_000776_020--Hb_017098_050 Hb_000442_170 Hb_000442_170 Hb_000776_020--Hb_000442_170 Hb_001109_130 Hb_001109_130 Hb_000776_020--Hb_001109_130 Hb_001301_010--Hb_000416_010 Hb_002845_020 Hb_002845_020 Hb_001301_010--Hb_002845_020 Hb_001301_010--Hb_000442_170 Hb_001866_100 Hb_001866_100 Hb_001301_010--Hb_001866_100 Hb_007205_020 Hb_007205_020 Hb_001301_010--Hb_007205_020 Hb_006469_090 Hb_006469_090 Hb_007850_110--Hb_006469_090 Hb_007850_110--Hb_017098_050 Hb_007850_110--Hb_001109_130 Hb_002635_010 Hb_002635_010 Hb_007850_110--Hb_002635_010 Hb_004607_160 Hb_004607_160 Hb_007850_110--Hb_004607_160 Hb_000130_480 Hb_000130_480 Hb_007850_110--Hb_000130_480 Hb_010311_020 Hb_010311_020 Hb_000416_010--Hb_010311_020 Hb_124579_020 Hb_124579_020 Hb_000416_010--Hb_124579_020 Hb_185474_020 Hb_185474_020 Hb_000416_010--Hb_185474_020 Hb_001109_170 Hb_001109_170 Hb_000416_010--Hb_001109_170 Hb_017098_050--Hb_001109_130 Hb_005496_170 Hb_005496_170 Hb_017098_050--Hb_005496_170 Hb_010880_010 Hb_010880_010 Hb_017098_050--Hb_010880_010 Hb_004943_010 Hb_004943_010 Hb_017098_050--Hb_004943_010 Hb_001963_110 Hb_001963_110 Hb_000442_170--Hb_001963_110 Hb_003992_220 Hb_003992_220 Hb_000442_170--Hb_003992_220 Hb_006594_080 Hb_006594_080 Hb_000442_170--Hb_006594_080 Hb_000191_100 Hb_000191_100 Hb_000442_170--Hb_000191_100 Hb_001109_130--Hb_010880_010 Hb_000258_210 Hb_000258_210 Hb_001109_130--Hb_000258_210 Hb_001109_130--Hb_004943_010 Hb_001109_130--Hb_005496_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.11112 10.6486 19.057 13.4423 0.0522543 0.150234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.129944 0.102089 0.347285 30.0782 45.4285

CAGE analysis