Hb_010880_010

Information

Type -
Description -
Location Contig10880: 251-1053
Sequence    

Annotation

kegg
ID cit:102624582
description TMV resistance protein N-like
nr
ID XP_012068500.1
description PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067L198
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05766 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010880_010 0.0 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
2 Hb_005496_170 0.0724799243 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
3 Hb_001109_130 0.0813065082 - - PREDICTED: coiled-coil domain-containing protein 136 isoform X1 [Jatropha curcas]
4 Hb_004122_060 0.0971173397 - - PREDICTED: uncharacterized acetyltransferase At3g50280-like [Jatropha curcas]
5 Hb_026144_030 0.0988020543 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
6 Hb_017098_050 0.1040374741 - - hypothetical protein POPTR_0001s03540g [Populus trichocarpa]
7 Hb_001153_090 0.1056193949 - - PREDICTED: protein FAM63A [Jatropha curcas]
8 Hb_001706_020 0.1064325262 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
9 Hb_009554_030 0.1084116636 - - PREDICTED: chlorophyll synthase, chloroplastic [Prunus mume]
10 Hb_001819_010 0.108416006 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
11 Hb_004785_200 0.1098710187 - - PREDICTED: protein MKS1 [Jatropha curcas]
12 Hb_005488_030 0.1112276119 - - F3F9.11 [Arabidopsis lyrata subsp. lyrata]
13 Hb_123560_050 0.1179044689 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
14 Hb_003077_140 0.1196595114 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
15 Hb_001174_030 0.1220239026 - - unnamed protein product [Vitis vinifera]
16 Hb_127661_010 0.1221379616 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_016637_020 0.1223398883 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
18 Hb_031862_200 0.1232558559 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
19 Hb_001544_070 0.1238691064 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
20 Hb_029866_110 0.1242180313 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]

Gene co-expression network

sample Hb_010880_010 Hb_010880_010 Hb_005496_170 Hb_005496_170 Hb_010880_010--Hb_005496_170 Hb_001109_130 Hb_001109_130 Hb_010880_010--Hb_001109_130 Hb_004122_060 Hb_004122_060 Hb_010880_010--Hb_004122_060 Hb_026144_030 Hb_026144_030 Hb_010880_010--Hb_026144_030 Hb_017098_050 Hb_017098_050 Hb_010880_010--Hb_017098_050 Hb_001153_090 Hb_001153_090 Hb_010880_010--Hb_001153_090 Hb_003224_010 Hb_003224_010 Hb_005496_170--Hb_003224_010 Hb_127661_010 Hb_127661_010 Hb_005496_170--Hb_127661_010 Hb_005496_170--Hb_017098_050 Hb_000261_370 Hb_000261_370 Hb_005496_170--Hb_000261_370 Hb_016637_020 Hb_016637_020 Hb_005496_170--Hb_016637_020 Hb_001109_130--Hb_017098_050 Hb_000258_210 Hb_000258_210 Hb_001109_130--Hb_000258_210 Hb_007850_110 Hb_007850_110 Hb_001109_130--Hb_007850_110 Hb_004943_010 Hb_004943_010 Hb_001109_130--Hb_004943_010 Hb_001109_130--Hb_005496_170 Hb_059000_010 Hb_059000_010 Hb_004122_060--Hb_059000_010 Hb_009554_030 Hb_009554_030 Hb_004122_060--Hb_009554_030 Hb_001544_070 Hb_001544_070 Hb_004122_060--Hb_001544_070 Hb_000946_050 Hb_000946_050 Hb_004122_060--Hb_000946_050 Hb_001141_160 Hb_001141_160 Hb_004122_060--Hb_001141_160 Hb_000092_030 Hb_000092_030 Hb_004122_060--Hb_000092_030 Hb_008111_010 Hb_008111_010 Hb_026144_030--Hb_008111_010 Hb_000614_190 Hb_000614_190 Hb_026144_030--Hb_000614_190 Hb_000767_010 Hb_000767_010 Hb_026144_030--Hb_000767_010 Hb_001143_140 Hb_001143_140 Hb_026144_030--Hb_001143_140 Hb_123560_050 Hb_123560_050 Hb_026144_030--Hb_123560_050 Hb_007420_020 Hb_007420_020 Hb_026144_030--Hb_007420_020 Hb_017098_050--Hb_007850_110 Hb_000776_020 Hb_000776_020 Hb_017098_050--Hb_000776_020 Hb_017098_050--Hb_004943_010 Hb_006269_010 Hb_006269_010 Hb_001153_090--Hb_006269_010 Hb_002849_120 Hb_002849_120 Hb_001153_090--Hb_002849_120 Hb_007747_100 Hb_007747_100 Hb_001153_090--Hb_007747_100 Hb_023344_130 Hb_023344_130 Hb_001153_090--Hb_023344_130 Hb_001160_020 Hb_001160_020 Hb_001153_090--Hb_001160_020 Hb_003077_140 Hb_003077_140 Hb_001153_090--Hb_003077_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.345193 0.292972 0.293648 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.402509 0.490737

CAGE analysis