Hb_001109_130

Information

Type -
Description -
Location Contig1109: 200889-204967
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01220g
description hypothetical protein
nr
ID XP_012070514.1
description PREDICTED: coiled-coil domain-containing protein 136 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L6S0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02784 PE=4 SV=1
Gene Ontology
ID GO:0015996
description ribonuclease p protein subunit p38-related isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03359: 200933-204969
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001109_130 0.0 - - PREDICTED: coiled-coil domain-containing protein 136 isoform X1 [Jatropha curcas]
2 Hb_017098_050 0.0769279043 - - hypothetical protein POPTR_0001s03540g [Populus trichocarpa]
3 Hb_010880_010 0.0813065082 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
4 Hb_000258_210 0.0882534322 - - prenyl-dependent CAAX protease, putative [Ricinus communis]
5 Hb_007850_110 0.0892209464 - - MADS-box transcription factor 3 [Hevea brasiliensis]
6 Hb_004943_010 0.1076872625 - - cationic amino acid transporter, putative [Ricinus communis]
7 Hb_005496_170 0.1080271825 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
8 Hb_014967_020 0.111405743 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_000776_020 0.1132684309 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]
10 Hb_003992_220 0.1152153402 - - s-receptor kinase, putative [Ricinus communis]
11 Hb_002622_010 0.1162452988 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
12 Hb_009554_030 0.1213769656 - - PREDICTED: chlorophyll synthase, chloroplastic [Prunus mume]
13 Hb_001660_050 0.1235297204 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Eucalyptus grandis]
14 Hb_015306_010 0.1241976464 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
15 Hb_029866_110 0.1256255404 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]
16 Hb_004607_160 0.1261656617 - - PREDICTED: uncharacterized protein LOC105134931 [Populus euphratica]
17 Hb_002308_060 0.1280500467 - - PREDICTED: cytochrome P450 704C1-like [Jatropha curcas]
18 Hb_000866_190 0.1310743758 - - transcription factor, putative [Ricinus communis]
19 Hb_004122_060 0.1331360775 - - PREDICTED: uncharacterized acetyltransferase At3g50280-like [Jatropha curcas]
20 Hb_006469_090 0.1332500183 - - PREDICTED: LOW QUALITY PROTEIN: myosin-11 [Jatropha curcas]

Gene co-expression network

sample Hb_001109_130 Hb_001109_130 Hb_017098_050 Hb_017098_050 Hb_001109_130--Hb_017098_050 Hb_010880_010 Hb_010880_010 Hb_001109_130--Hb_010880_010 Hb_000258_210 Hb_000258_210 Hb_001109_130--Hb_000258_210 Hb_007850_110 Hb_007850_110 Hb_001109_130--Hb_007850_110 Hb_004943_010 Hb_004943_010 Hb_001109_130--Hb_004943_010 Hb_005496_170 Hb_005496_170 Hb_001109_130--Hb_005496_170 Hb_017098_050--Hb_007850_110 Hb_017098_050--Hb_005496_170 Hb_017098_050--Hb_010880_010 Hb_000776_020 Hb_000776_020 Hb_017098_050--Hb_000776_020 Hb_017098_050--Hb_004943_010 Hb_010880_010--Hb_005496_170 Hb_004122_060 Hb_004122_060 Hb_010880_010--Hb_004122_060 Hb_026144_030 Hb_026144_030 Hb_010880_010--Hb_026144_030 Hb_001153_090 Hb_001153_090 Hb_010880_010--Hb_001153_090 Hb_014967_020 Hb_014967_020 Hb_000258_210--Hb_014967_020 Hb_065521_010 Hb_065521_010 Hb_000258_210--Hb_065521_010 Hb_000258_210--Hb_004943_010 Hb_009641_040 Hb_009641_040 Hb_000258_210--Hb_009641_040 Hb_007875_020 Hb_007875_020 Hb_000258_210--Hb_007875_020 Hb_006469_090 Hb_006469_090 Hb_007850_110--Hb_006469_090 Hb_002635_010 Hb_002635_010 Hb_007850_110--Hb_002635_010 Hb_004607_160 Hb_004607_160 Hb_007850_110--Hb_004607_160 Hb_000130_480 Hb_000130_480 Hb_007850_110--Hb_000130_480 Hb_168319_060 Hb_168319_060 Hb_004943_010--Hb_168319_060 Hb_000836_260 Hb_000836_260 Hb_004943_010--Hb_000836_260 Hb_004943_010--Hb_007850_110 Hb_002622_010 Hb_002622_010 Hb_004943_010--Hb_002622_010 Hb_003224_010 Hb_003224_010 Hb_005496_170--Hb_003224_010 Hb_127661_010 Hb_127661_010 Hb_005496_170--Hb_127661_010 Hb_000261_370 Hb_000261_370 Hb_005496_170--Hb_000261_370 Hb_016637_020 Hb_016637_020 Hb_005496_170--Hb_016637_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.24549 7.9694 9.51821 0 0.0239029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0291276 0.0229162 0.0431516 13.9109 16.4363

CAGE analysis