Hb_000261_370

Information

Type -
Description -
Location Contig261: 313823-316327
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27301: 313374-313903 , PASA_asmbl_27303: 317048-317532
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_370 0.0 - - -
2 Hb_127661_010 0.047810451 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_007113_020 0.082258106 - - -
4 Hb_029576_100 0.0932357845 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
5 Hb_005496_170 0.0998473546 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
6 Hb_001634_080 0.1025119527 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
7 Hb_016637_020 0.10291588 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
8 Hb_000417_250 0.1059810534 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
9 Hb_094148_010 0.1131304667 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
10 Hb_000680_020 0.1146355829 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
11 Hb_002849_120 0.1185966388 - - ferric reductase oxidase [Manihot esculenta]
12 Hb_001501_020 0.1193114605 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
13 Hb_000108_090 0.1202999903 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
14 Hb_013786_010 0.1222704617 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_003224_010 0.122484036 - - -
16 Hb_007205_020 0.1244373985 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
17 Hb_003494_180 0.1273393116 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
18 Hb_000501_040 0.1278126137 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_003849_030 0.1289017463 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
20 Hb_094439_010 0.1318595721 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]

Gene co-expression network

sample Hb_000261_370 Hb_000261_370 Hb_127661_010 Hb_127661_010 Hb_000261_370--Hb_127661_010 Hb_007113_020 Hb_007113_020 Hb_000261_370--Hb_007113_020 Hb_029576_100 Hb_029576_100 Hb_000261_370--Hb_029576_100 Hb_005496_170 Hb_005496_170 Hb_000261_370--Hb_005496_170 Hb_001634_080 Hb_001634_080 Hb_000261_370--Hb_001634_080 Hb_016637_020 Hb_016637_020 Hb_000261_370--Hb_016637_020 Hb_127661_010--Hb_016637_020 Hb_127661_010--Hb_029576_100 Hb_127661_010--Hb_005496_170 Hb_000680_020 Hb_000680_020 Hb_127661_010--Hb_000680_020 Hb_000501_040 Hb_000501_040 Hb_127661_010--Hb_000501_040 Hb_001501_020 Hb_001501_020 Hb_007113_020--Hb_001501_020 Hb_006827_030 Hb_006827_030 Hb_007113_020--Hb_006827_030 Hb_003849_030 Hb_003849_030 Hb_007113_020--Hb_003849_030 Hb_171168_010 Hb_171168_010 Hb_007113_020--Hb_171168_010 Hb_007113_020--Hb_127661_010 Hb_013786_010 Hb_013786_010 Hb_029576_100--Hb_013786_010 Hb_000417_250 Hb_000417_250 Hb_029576_100--Hb_000417_250 Hb_029576_100--Hb_000501_040 Hb_029576_100--Hb_000680_020 Hb_010880_010 Hb_010880_010 Hb_005496_170--Hb_010880_010 Hb_003224_010 Hb_003224_010 Hb_005496_170--Hb_003224_010 Hb_017098_050 Hb_017098_050 Hb_005496_170--Hb_017098_050 Hb_005496_170--Hb_016637_020 Hb_000108_090 Hb_000108_090 Hb_001634_080--Hb_000108_090 Hb_107809_010 Hb_107809_010 Hb_001634_080--Hb_107809_010 Hb_005542_040 Hb_005542_040 Hb_001634_080--Hb_005542_040 Hb_001634_080--Hb_127661_010 Hb_170878_050 Hb_170878_050 Hb_001634_080--Hb_170878_050 Hb_007676_040 Hb_007676_040 Hb_001634_080--Hb_007676_040 Hb_000191_100 Hb_000191_100 Hb_016637_020--Hb_000191_100 Hb_003494_180 Hb_003494_180 Hb_016637_020--Hb_003494_180 Hb_007205_020 Hb_007205_020 Hb_016637_020--Hb_007205_020 Hb_016637_020--Hb_170878_050 Hb_029866_110 Hb_029866_110 Hb_016637_020--Hb_029866_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.386967 0.436246 0.114928 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.388236 0.450222

CAGE analysis