Hb_171168_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig171168: 11602-13408
Sequence    

Annotation

kegg
ID rcu:RCOM_0806290
description NAC domain-containing protein, putative
nr
ID XP_002525740.1
description NAC domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9FIW5
description Putative NAC domain-containing protein 94 OS=Arabidopsis thaliana GN=ANAC094 PE=3 SV=1
trembl
ID B9SIC1
description NAC domain-containing protein, putative OS=Ricinus communis GN=RCOM_0806290 PE=4 SV=1
Gene Ontology
ID GO:0003677
description nac transcription factor 29-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171168_010 0.0 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
2 Hb_006827_030 0.0817943524 - - oligopeptide transporter, putative [Ricinus communis]
3 Hb_007113_020 0.0961582815 - - -
4 Hb_001579_060 0.1069699002 - - carbonic anhydrase, putative [Ricinus communis]
5 Hb_002155_020 0.1089752589 - - PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
6 Hb_002030_090 0.110958359 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
7 Hb_000049_170 0.1113279868 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001836_010 0.1118356563 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
9 Hb_010904_010 0.1136417502 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
10 Hb_003683_200 0.1152655603 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
11 Hb_008878_020 0.1235998018 - - PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]
12 Hb_064293_010 0.1240559066 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
13 Hb_094439_010 0.1273396281 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
14 Hb_001508_030 0.129453879 - - hypothetical protein VITISV_029808 [Vitis vinifera]
15 Hb_000680_020 0.1310316987 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
16 Hb_002849_120 0.1324708917 - - ferric reductase oxidase [Manihot esculenta]
17 Hb_003849_030 0.1325650001 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
18 Hb_001501_020 0.1330326698 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
19 Hb_000331_220 0.1342135523 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000010_370 0.1360353603 - - PREDICTED: uncharacterized protein LOC105640263 [Jatropha curcas]

Gene co-expression network

sample Hb_171168_010 Hb_171168_010 Hb_006827_030 Hb_006827_030 Hb_171168_010--Hb_006827_030 Hb_007113_020 Hb_007113_020 Hb_171168_010--Hb_007113_020 Hb_001579_060 Hb_001579_060 Hb_171168_010--Hb_001579_060 Hb_002155_020 Hb_002155_020 Hb_171168_010--Hb_002155_020 Hb_002030_090 Hb_002030_090 Hb_171168_010--Hb_002030_090 Hb_000049_170 Hb_000049_170 Hb_171168_010--Hb_000049_170 Hb_006827_030--Hb_001579_060 Hb_007035_010 Hb_007035_010 Hb_006827_030--Hb_007035_010 Hb_006827_030--Hb_000049_170 Hb_006827_030--Hb_007113_020 Hb_001883_010 Hb_001883_010 Hb_006827_030--Hb_001883_010 Hb_000261_370 Hb_000261_370 Hb_007113_020--Hb_000261_370 Hb_001501_020 Hb_001501_020 Hb_007113_020--Hb_001501_020 Hb_003849_030 Hb_003849_030 Hb_007113_020--Hb_003849_030 Hb_127661_010 Hb_127661_010 Hb_007113_020--Hb_127661_010 Hb_000694_050 Hb_000694_050 Hb_001579_060--Hb_000694_050 Hb_000987_020 Hb_000987_020 Hb_001579_060--Hb_000987_020 Hb_001579_060--Hb_001883_010 Hb_000680_130 Hb_000680_130 Hb_001579_060--Hb_000680_130 Hb_000968_010 Hb_000968_010 Hb_001579_060--Hb_000968_010 Hb_011028_030 Hb_011028_030 Hb_002155_020--Hb_011028_030 Hb_000373_010 Hb_000373_010 Hb_002155_020--Hb_000373_010 Hb_003643_080 Hb_003643_080 Hb_002155_020--Hb_003643_080 Hb_000644_010 Hb_000644_010 Hb_002155_020--Hb_000644_010 Hb_002155_020--Hb_000680_130 Hb_002407_090 Hb_002407_090 Hb_002155_020--Hb_002407_090 Hb_008878_020 Hb_008878_020 Hb_002030_090--Hb_008878_020 Hb_093364_010 Hb_093364_010 Hb_002030_090--Hb_093364_010 Hb_002030_090--Hb_001579_060 Hb_002030_090--Hb_000987_020 Hb_000037_200 Hb_000037_200 Hb_002030_090--Hb_000037_200 Hb_029095_010 Hb_029095_010 Hb_002030_090--Hb_029095_010 Hb_002845_020 Hb_002845_020 Hb_000049_170--Hb_002845_020 Hb_006588_020 Hb_006588_020 Hb_000049_170--Hb_006588_020 Hb_001866_100 Hb_001866_100 Hb_000049_170--Hb_001866_100 Hb_000500_360 Hb_000500_360 Hb_000049_170--Hb_000500_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0558207 9.47431 11.6447 3.49209 0 0.0591341
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0425207 0 0 4.78677 16.9207

CAGE analysis