Hb_007035_010

Information

Type -
Description -
Location Contig7035: 11485-33055
Sequence    

Annotation

kegg
ID rcu:RCOM_1158850
description synaptotagmin, putative
nr
ID XP_012093013.1
description PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
swissprot
ID A0JJX5
description Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1
trembl
ID A0A067J8M7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05895 PE=4 SV=1
Gene Ontology
ID GO:0005515
description c2 domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54980: 13930-15436 , PASA_asmbl_54981: 19930-20318 , PASA_asmbl_54982: 22714-23112 , PASA_asmbl_54983: 23787-24736 , PASA_asmbl_54985: 33024-33269
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007035_010 0.0 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
2 Hb_001866_100 0.0655896238 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
3 Hb_006827_030 0.0845357437 - - oligopeptide transporter, putative [Ricinus communis]
4 Hb_003680_010 0.0867141058 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_006588_020 0.091973671 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
6 Hb_001836_010 0.0985773503 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
7 Hb_000009_390 0.0997918403 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
8 Hb_031862_200 0.1026063505 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
9 Hb_004785_200 0.1038411198 - - PREDICTED: protein MKS1 [Jatropha curcas]
10 Hb_007205_020 0.1094757681 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
11 Hb_002615_080 0.1123807319 - - PREDICTED: non-specific phospholipase C2 [Jatropha curcas]
12 Hb_001514_150 0.1164986203 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
13 Hb_002818_070 0.117473278 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
14 Hb_002845_020 0.1191826828 - - hypothetical protein POPTR_0012s14920g [Populus trichocarpa]
15 Hb_188075_010 0.1208412787 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
16 Hb_000049_170 0.1225160213 - - conserved hypothetical protein [Ricinus communis]
17 Hb_031201_010 0.1245737913 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
18 Hb_032695_010 0.1257436031 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Vitis vinifera]
19 Hb_001652_130 0.1263088361 - - hypothetical protein B456_002G193900 [Gossypium raimondii]
20 Hb_001301_010 0.1267402105 - - receptor protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007035_010 Hb_007035_010 Hb_001866_100 Hb_001866_100 Hb_007035_010--Hb_001866_100 Hb_006827_030 Hb_006827_030 Hb_007035_010--Hb_006827_030 Hb_003680_010 Hb_003680_010 Hb_007035_010--Hb_003680_010 Hb_006588_020 Hb_006588_020 Hb_007035_010--Hb_006588_020 Hb_001836_010 Hb_001836_010 Hb_007035_010--Hb_001836_010 Hb_000009_390 Hb_000009_390 Hb_007035_010--Hb_000009_390 Hb_001866_100--Hb_000009_390 Hb_002845_020 Hb_002845_020 Hb_001866_100--Hb_002845_020 Hb_001866_100--Hb_006588_020 Hb_007205_020 Hb_007205_020 Hb_001866_100--Hb_007205_020 Hb_031862_200 Hb_031862_200 Hb_001866_100--Hb_031862_200 Hb_001579_060 Hb_001579_060 Hb_006827_030--Hb_001579_060 Hb_171168_010 Hb_171168_010 Hb_006827_030--Hb_171168_010 Hb_000049_170 Hb_000049_170 Hb_006827_030--Hb_000049_170 Hb_007113_020 Hb_007113_020 Hb_006827_030--Hb_007113_020 Hb_001883_010 Hb_001883_010 Hb_006827_030--Hb_001883_010 Hb_002615_080 Hb_002615_080 Hb_003680_010--Hb_002615_080 Hb_004785_200 Hb_004785_200 Hb_003680_010--Hb_004785_200 Hb_003680_010--Hb_031862_200 Hb_003680_010--Hb_006827_030 Hb_003680_010--Hb_001883_010 Hb_005092_090 Hb_005092_090 Hb_006588_020--Hb_005092_090 Hb_001345_040 Hb_001345_040 Hb_006588_020--Hb_001345_040 Hb_006588_020--Hb_000049_170 Hb_006588_020--Hb_000009_390 Hb_002818_070 Hb_002818_070 Hb_001836_010--Hb_002818_070 Hb_001836_010--Hb_000009_390 Hb_000331_220 Hb_000331_220 Hb_001836_010--Hb_000331_220 Hb_003683_200 Hb_003683_200 Hb_001836_010--Hb_003683_200 Hb_001836_010--Hb_006827_030 Hb_000009_390--Hb_002818_070 Hb_001856_110 Hb_001856_110 Hb_000009_390--Hb_001856_110 Hb_001514_150 Hb_001514_150 Hb_000009_390--Hb_001514_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0127897 4.54467 4.04744 3.16033 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0228226 0 4.46717 11.2971

CAGE analysis