Hb_001856_110

Information

Type -
Description -
Location Contig1856: 150935-168571
Sequence    

Annotation

kegg
ID pop:POPTR_0010s08560g
description POPTRDRAFT_821920; hypothetical protein
nr
ID XP_011030536.1
description PREDICTED: cellulose synthase-like protein G2 [Populus euphratica]
swissprot
ID Q8VYR4
description Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1
trembl
ID A0A061ENK3
description Cellulose synthase like G2, putative OS=Theobroma cacao GN=TCM_046772 PE=4 SV=1
Gene Ontology
ID GO:0016020
description cellulose synthase like g2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18152: 153621-164041 , PASA_asmbl_18153: 160132-162232 , PASA_asmbl_18155: 162396-162625 , PASA_asmbl_18156: 165988-166265 , PASA_asmbl_18157: 166654-166967
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001856_110 0.0 - - PREDICTED: cellulose synthase-like protein G2 [Populus euphratica]
2 Hb_000009_390 0.0927929655 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
3 Hb_071130_020 0.0983203968 - - -
4 Hb_003683_200 0.1057612395 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
5 Hb_031949_010 0.1080743496 - - -
6 Hb_000680_020 0.1094869579 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
7 Hb_003494_180 0.1178089103 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
8 Hb_001866_100 0.1234156465 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
9 Hb_016637_020 0.1293142247 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
10 Hb_002818_070 0.1382643602 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
11 Hb_005470_040 0.1402630084 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
12 Hb_000191_100 0.1429571323 - - cytochrome P450, putative [Ricinus communis]
13 Hb_057321_010 0.143211968 - - receptor serine/threonine kinase, putative [Ricinus communis]
14 Hb_001514_150 0.1467113145 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
15 Hb_001836_010 0.1472672843 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
16 Hb_003913_040 0.1506263971 - - ferric reductase oxidase [Manihot esculenta]
17 Hb_003077_140 0.1508683137 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
18 Hb_127661_010 0.1510318529 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000417_250 0.1511023587 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
20 Hb_007205_020 0.1525232201 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]

Gene co-expression network

sample Hb_001856_110 Hb_001856_110 Hb_000009_390 Hb_000009_390 Hb_001856_110--Hb_000009_390 Hb_071130_020 Hb_071130_020 Hb_001856_110--Hb_071130_020 Hb_003683_200 Hb_003683_200 Hb_001856_110--Hb_003683_200 Hb_031949_010 Hb_031949_010 Hb_001856_110--Hb_031949_010 Hb_000680_020 Hb_000680_020 Hb_001856_110--Hb_000680_020 Hb_003494_180 Hb_003494_180 Hb_001856_110--Hb_003494_180 Hb_001866_100 Hb_001866_100 Hb_000009_390--Hb_001866_100 Hb_002818_070 Hb_002818_070 Hb_000009_390--Hb_002818_070 Hb_001836_010 Hb_001836_010 Hb_000009_390--Hb_001836_010 Hb_007035_010 Hb_007035_010 Hb_000009_390--Hb_007035_010 Hb_001514_150 Hb_001514_150 Hb_000009_390--Hb_001514_150 Hb_000331_220 Hb_000331_220 Hb_071130_020--Hb_000331_220 Hb_071130_020--Hb_000680_020 Hb_071130_020--Hb_002818_070 Hb_071130_020--Hb_000009_390 Hb_071130_020--Hb_003683_200 Hb_003683_200--Hb_000680_020 Hb_000116_330 Hb_000116_330 Hb_003683_200--Hb_000116_330 Hb_003683_200--Hb_001836_010 Hb_004525_020 Hb_004525_020 Hb_003683_200--Hb_004525_020 Hb_002849_120 Hb_002849_120 Hb_003683_200--Hb_002849_120 Hb_005470_040 Hb_005470_040 Hb_031949_010--Hb_005470_040 Hb_000377_160 Hb_000377_160 Hb_031949_010--Hb_000377_160 Hb_031949_010--Hb_000009_390 Hb_026053_030 Hb_026053_030 Hb_031949_010--Hb_026053_030 Hb_000417_150 Hb_000417_150 Hb_031949_010--Hb_000417_150 Hb_000680_020--Hb_002849_120 Hb_033153_040 Hb_033153_040 Hb_000680_020--Hb_033153_040 Hb_127661_010 Hb_127661_010 Hb_000680_020--Hb_127661_010 Hb_003077_140 Hb_003077_140 Hb_000680_020--Hb_003077_140 Hb_002845_020 Hb_002845_020 Hb_003494_180--Hb_002845_020 Hb_016637_020 Hb_016637_020 Hb_003494_180--Hb_016637_020 Hb_007205_020 Hb_007205_020 Hb_003494_180--Hb_007205_020 Hb_003494_180--Hb_001866_100 Hb_057321_010 Hb_057321_010 Hb_003494_180--Hb_057321_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0211421 11.9983 5.78684 1.69645 0.00346726 0.0195062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109065 0.0594234 0.0381443 8.38676 16.2622

CAGE analysis