Hb_000680_020

Information

Type transcription factor
Description TF Family: C2H2
Location Contig680: 15156-18571
Sequence    

Annotation

kegg
ID rcu:RCOM_0311620
description nucleic acid binding protein, putative
nr
ID XP_002527396.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q9LRW7
description Protein indeterminate-domain 11 OS=Arabidopsis thaliana GN=IDD11 PE=2 SV=1
trembl
ID B9SN27
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0311620 PE=4 SV=1
Gene Ontology
ID GO:0005488
description zinc finger protein nutcracker

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53736: 15219-18184
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000680_020 0.0 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
2 Hb_003683_200 0.0763874273 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
3 Hb_002849_120 0.0845025332 - - ferric reductase oxidase [Manihot esculenta]
4 Hb_033153_040 0.0888251131 - - o-methyltransferase, putative [Ricinus communis]
5 Hb_127661_010 0.0903256761 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_071130_020 0.0979666316 - - -
7 Hb_003077_140 0.102291163 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
8 Hb_029576_100 0.1063685388 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
9 Hb_002818_070 0.1089740408 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
10 Hb_001856_110 0.1094869579 - - PREDICTED: cellulose synthase-like protein G2 [Populus euphratica]
11 Hb_000417_250 0.1121239569 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
12 Hb_000261_370 0.1146355829 - - -
13 Hb_001836_010 0.1174457429 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
14 Hb_016637_020 0.123644423 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
15 Hb_000009_390 0.1240405653 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
16 Hb_007113_020 0.1252277049 - - -
17 Hb_001153_090 0.130897181 - - PREDICTED: protein FAM63A [Jatropha curcas]
18 Hb_013786_010 0.1310039289 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_171168_010 0.1310316987 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
20 Hb_000116_330 0.1310478044 - - PREDICTED: glutamate receptor 3.6-like [Jatropha curcas]

Gene co-expression network

sample Hb_000680_020 Hb_000680_020 Hb_003683_200 Hb_003683_200 Hb_000680_020--Hb_003683_200 Hb_002849_120 Hb_002849_120 Hb_000680_020--Hb_002849_120 Hb_033153_040 Hb_033153_040 Hb_000680_020--Hb_033153_040 Hb_127661_010 Hb_127661_010 Hb_000680_020--Hb_127661_010 Hb_071130_020 Hb_071130_020 Hb_000680_020--Hb_071130_020 Hb_003077_140 Hb_003077_140 Hb_000680_020--Hb_003077_140 Hb_000116_330 Hb_000116_330 Hb_003683_200--Hb_000116_330 Hb_001836_010 Hb_001836_010 Hb_003683_200--Hb_001836_010 Hb_001856_110 Hb_001856_110 Hb_003683_200--Hb_001856_110 Hb_004525_020 Hb_004525_020 Hb_003683_200--Hb_004525_020 Hb_003683_200--Hb_002849_120 Hb_002849_120--Hb_033153_040 Hb_001153_090 Hb_001153_090 Hb_002849_120--Hb_001153_090 Hb_003849_030 Hb_003849_030 Hb_002849_120--Hb_003849_030 Hb_001160_020 Hb_001160_020 Hb_002849_120--Hb_001160_020 Hb_002849_120--Hb_127661_010 Hb_005569_030 Hb_005569_030 Hb_033153_040--Hb_005569_030 Hb_033153_040--Hb_003077_140 Hb_000313_100 Hb_000313_100 Hb_033153_040--Hb_000313_100 Hb_033153_040--Hb_001153_090 Hb_000261_370 Hb_000261_370 Hb_127661_010--Hb_000261_370 Hb_016637_020 Hb_016637_020 Hb_127661_010--Hb_016637_020 Hb_029576_100 Hb_029576_100 Hb_127661_010--Hb_029576_100 Hb_005496_170 Hb_005496_170 Hb_127661_010--Hb_005496_170 Hb_000501_040 Hb_000501_040 Hb_127661_010--Hb_000501_040 Hb_000331_220 Hb_000331_220 Hb_071130_020--Hb_000331_220 Hb_071130_020--Hb_001856_110 Hb_002818_070 Hb_002818_070 Hb_071130_020--Hb_002818_070 Hb_000009_390 Hb_000009_390 Hb_071130_020--Hb_000009_390 Hb_071130_020--Hb_003683_200 Hb_000767_010 Hb_000767_010 Hb_003077_140--Hb_000767_010 Hb_003077_140--Hb_001153_090 Hb_123560_050 Hb_123560_050 Hb_003077_140--Hb_123560_050 Hb_001357_360 Hb_001357_360 Hb_003077_140--Hb_001357_360 Hb_003077_140--Hb_002818_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0996938 13.2737 8.36892 3.21021 0.00869614 0.00824463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0197239 0.01552 0 7.37062 13.5917

CAGE analysis