Hb_000116_330

Information

Type -
Description -
Location Contig116: 276377-290278
Sequence    

Annotation

kegg
ID vvi:100262768
description glutamate receptor 3.6
nr
ID XP_012065413.1
description PREDICTED: glutamate receptor 3.6-like [Jatropha curcas]
swissprot
ID Q84W41
description Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=GLR3.6 PE=2 SV=1
trembl
ID A0A067LGV3
description Glutamate receptor OS=Jatropha curcas GN=JCGZ_22407 PE=3 SV=1
Gene Ontology
ID GO:0016021
description glutamate receptor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04866: 277956-278198 , PASA_asmbl_04868: 278810-279433 , PASA_asmbl_04869: 280184-280700 , PASA_asmbl_04870: 284361-285140 , PASA_asmbl_04871: 285367-286174 , PASA_asmbl_04872: 286252-287857 , PASA_asmbl_04873: 287891-287996
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_330 0.0 - - PREDICTED: glutamate receptor 3.6-like [Jatropha curcas]
2 Hb_003683_200 0.0948109776 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
3 Hb_004525_020 0.0967690066 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 6-like [Jatropha curcas]
4 Hb_000417_250 0.1051573314 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
5 Hb_001160_020 0.1281722902 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
6 Hb_000680_020 0.1310478044 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
7 Hb_000261_370 0.1321849507 - - -
8 Hb_007113_020 0.1323789298 - - -
9 Hb_127661_010 0.1359764951 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_057321_010 0.1393803726 - - receptor serine/threonine kinase, putative [Ricinus communis]
11 Hb_002849_120 0.1403507844 - - ferric reductase oxidase [Manihot esculenta]
12 Hb_000120_870 0.1435215642 rubber biosynthesis Gene Name: CPT6 -
13 Hb_003849_030 0.1449113388 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
14 Hb_029576_100 0.1464213876 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
15 Hb_007951_070 0.1469099023 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
16 Hb_171168_010 0.1470513794 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
17 Hb_000027_100 0.1501088737 - - hypothetical protein VITISV_039936 [Vitis vinifera]
18 Hb_000191_100 0.1507237895 - - cytochrome P450, putative [Ricinus communis]
19 Hb_001501_020 0.1520839083 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
20 Hb_007747_100 0.157082055 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]

Gene co-expression network

sample Hb_000116_330 Hb_000116_330 Hb_003683_200 Hb_003683_200 Hb_000116_330--Hb_003683_200 Hb_004525_020 Hb_004525_020 Hb_000116_330--Hb_004525_020 Hb_000417_250 Hb_000417_250 Hb_000116_330--Hb_000417_250 Hb_001160_020 Hb_001160_020 Hb_000116_330--Hb_001160_020 Hb_000680_020 Hb_000680_020 Hb_000116_330--Hb_000680_020 Hb_000261_370 Hb_000261_370 Hb_000116_330--Hb_000261_370 Hb_003683_200--Hb_000680_020 Hb_001836_010 Hb_001836_010 Hb_003683_200--Hb_001836_010 Hb_001856_110 Hb_001856_110 Hb_003683_200--Hb_001856_110 Hb_003683_200--Hb_004525_020 Hb_002849_120 Hb_002849_120 Hb_003683_200--Hb_002849_120 Hb_000027_100 Hb_000027_100 Hb_004525_020--Hb_000027_100 Hb_000365_220 Hb_000365_220 Hb_004525_020--Hb_000365_220 Hb_004525_020--Hb_001160_020 Hb_004525_020--Hb_000417_250 Hb_029576_100 Hb_029576_100 Hb_000417_250--Hb_029576_100 Hb_013786_010 Hb_013786_010 Hb_000417_250--Hb_013786_010 Hb_000417_250--Hb_000261_370 Hb_000417_250--Hb_000680_020 Hb_127661_010 Hb_127661_010 Hb_000417_250--Hb_127661_010 Hb_007747_100 Hb_007747_100 Hb_001160_020--Hb_007747_100 Hb_003849_030 Hb_003849_030 Hb_001160_020--Hb_003849_030 Hb_001160_020--Hb_002849_120 Hb_001153_090 Hb_001153_090 Hb_001160_020--Hb_001153_090 Hb_000318_050 Hb_000318_050 Hb_001160_020--Hb_000318_050 Hb_023344_130 Hb_023344_130 Hb_001160_020--Hb_023344_130 Hb_000680_020--Hb_002849_120 Hb_033153_040 Hb_033153_040 Hb_000680_020--Hb_033153_040 Hb_000680_020--Hb_127661_010 Hb_071130_020 Hb_071130_020 Hb_000680_020--Hb_071130_020 Hb_003077_140 Hb_003077_140 Hb_000680_020--Hb_003077_140 Hb_000261_370--Hb_127661_010 Hb_007113_020 Hb_007113_020 Hb_000261_370--Hb_007113_020 Hb_000261_370--Hb_029576_100 Hb_005496_170 Hb_005496_170 Hb_000261_370--Hb_005496_170 Hb_001634_080 Hb_001634_080 Hb_000261_370--Hb_001634_080 Hb_016637_020 Hb_016637_020 Hb_000261_370--Hb_016637_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0108333 6.93425 6.96763 1.88838 0.137338 0.0820503
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0303201 0.0178966 0.55191 5.03127 8.80388

CAGE analysis