Hb_013786_010

Information

Type -
Description -
Location Contig13786: 1167-2629
Sequence    

Annotation

kegg
ID rcu:RCOM_1080970
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002514954.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID O22476
description Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1
trembl
ID B9RMI5
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1080970 PE=4 SV=1
Gene Ontology
ID GO:0016491
description receptor-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013786_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_029576_100 0.0759824449 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
3 Hb_000417_250 0.0963966718 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
4 Hb_001388_020 0.1201398658 - - PREDICTED: F-box/kelch-repeat protein SKIP20 [Jatropha curcas]
5 Hb_000261_370 0.1222704617 - - -
6 Hb_168509_020 0.1241777439 - - macrophage migration inhibitory factor family protein [Populus trichocarpa]
7 Hb_127661_010 0.1242231647 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_000680_020 0.1310039289 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
9 Hb_000501_040 0.1406048016 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_001634_080 0.1535237501 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
11 Hb_011038_020 0.1578493056 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001427_220 0.1608842437 - - hypothetical protein CISIN_1g033375mg [Citrus sinensis]
13 Hb_094439_010 0.16411329 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
14 Hb_009780_010 0.1650054054 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002849_120 0.1658481986 - - ferric reductase oxidase [Manihot esculenta]
16 Hb_000177_130 0.1690994864 - - wall-associated kinase, putative [Ricinus communis]
17 Hb_071130_020 0.169189406 - - -
18 Hb_001856_110 0.1702979675 - - PREDICTED: cellulose synthase-like protein G2 [Populus euphratica]
19 Hb_010614_010 0.1711041449 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
20 Hb_057321_010 0.1725395279 - - receptor serine/threonine kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_013786_010 Hb_013786_010 Hb_029576_100 Hb_029576_100 Hb_013786_010--Hb_029576_100 Hb_000417_250 Hb_000417_250 Hb_013786_010--Hb_000417_250 Hb_001388_020 Hb_001388_020 Hb_013786_010--Hb_001388_020 Hb_000261_370 Hb_000261_370 Hb_013786_010--Hb_000261_370 Hb_168509_020 Hb_168509_020 Hb_013786_010--Hb_168509_020 Hb_127661_010 Hb_127661_010 Hb_013786_010--Hb_127661_010 Hb_029576_100--Hb_127661_010 Hb_029576_100--Hb_000417_250 Hb_000501_040 Hb_000501_040 Hb_029576_100--Hb_000501_040 Hb_029576_100--Hb_000261_370 Hb_000680_020 Hb_000680_020 Hb_029576_100--Hb_000680_020 Hb_000116_330 Hb_000116_330 Hb_000417_250--Hb_000116_330 Hb_000417_250--Hb_000261_370 Hb_000417_250--Hb_000680_020 Hb_000417_250--Hb_127661_010 Hb_001427_220 Hb_001427_220 Hb_001388_020--Hb_001427_220 Hb_040963_010 Hb_040963_010 Hb_001388_020--Hb_040963_010 Hb_148121_030 Hb_148121_030 Hb_001388_020--Hb_148121_030 Hb_136546_010 Hb_136546_010 Hb_001388_020--Hb_136546_010 Hb_107809_010 Hb_107809_010 Hb_001388_020--Hb_107809_010 Hb_000261_370--Hb_127661_010 Hb_007113_020 Hb_007113_020 Hb_000261_370--Hb_007113_020 Hb_005496_170 Hb_005496_170 Hb_000261_370--Hb_005496_170 Hb_001634_080 Hb_001634_080 Hb_000261_370--Hb_001634_080 Hb_016637_020 Hb_016637_020 Hb_000261_370--Hb_016637_020 Hb_101034_020 Hb_101034_020 Hb_168509_020--Hb_101034_020 Hb_011038_020 Hb_011038_020 Hb_168509_020--Hb_011038_020 Hb_168509_020--Hb_000417_250 Hb_094439_010 Hb_094439_010 Hb_168509_020--Hb_094439_010 Hb_168509_020--Hb_029576_100 Hb_127661_010--Hb_016637_020 Hb_127661_010--Hb_005496_170 Hb_127661_010--Hb_000680_020 Hb_127661_010--Hb_000501_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.40353 2.36954 0.287106 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.09752 2.26454

CAGE analysis