Hb_001427_220

Information

Type -
Description -
Location Contig1427: 178937-179216
Sequence    

Annotation

kegg
ID cit:102612054
description 60S ribosomal protein L31-like
nr
ID KDO55930.1
description hypothetical protein CISIN_1g033375mg [Citrus sinensis]
swissprot
ID P46290
description 60S ribosomal protein L31 OS=Nicotiana glutinosa GN=RPL31 PE=2 SV=1
trembl
ID A0A067EPW5
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033375mg PE=4 SV=1
Gene Ontology
ID GO:0005622
description 60s ribosomal protein l31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11339: 178970-179372
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001427_220 0.0 - - hypothetical protein CISIN_1g033375mg [Citrus sinensis]
2 Hb_136546_010 0.0614864152 - - PREDICTED: wall-associated receptor kinase-like 1, partial [Populus euphratica]
3 Hb_001388_020 0.1159089206 - - PREDICTED: F-box/kelch-repeat protein SKIP20 [Jatropha curcas]
4 Hb_101034_020 0.1600417559 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
5 Hb_013786_010 0.1608842437 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_168509_020 0.1723248107 - - macrophage migration inhibitory factor family protein [Populus trichocarpa]
7 Hb_148121_030 0.1745683661 - - PREDICTED: zinc-finger homeodomain protein 14 [Gossypium raimondii]
8 Hb_040963_010 0.1780372559 - - PREDICTED: polyneuridine-aldehyde esterase-like [Populus euphratica]
9 Hb_011038_020 0.1843800654 - - conserved hypothetical protein [Ricinus communis]
10 Hb_063523_010 0.1862303262 - - -
11 Hb_079158_010 0.1870645025 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
12 Hb_002811_330 0.18849387 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
13 Hb_029576_100 0.1974271756 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 31 [Jatropha curcas]
14 Hb_000836_560 0.2025840938 - - -
15 Hb_107809_010 0.2057363267 - - JHL06P13.14 [Jatropha curcas]
16 Hb_000203_060 0.2083541331 transcription factor TF Family: G2-like hypothetical protein POPTR_0004s05660g [Populus trichocarpa]
17 Hb_001634_080 0.210894905 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
18 Hb_000417_250 0.2139667443 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 65 [Jatropha curcas]
19 Hb_120268_010 0.2158007578 - - PREDICTED: chitin elicitor receptor kinase 1-like isoform X3 [Populus euphratica]
20 Hb_033045_010 0.2158564704 - - copine, putative [Ricinus communis]

Gene co-expression network

sample Hb_001427_220 Hb_001427_220 Hb_136546_010 Hb_136546_010 Hb_001427_220--Hb_136546_010 Hb_001388_020 Hb_001388_020 Hb_001427_220--Hb_001388_020 Hb_101034_020 Hb_101034_020 Hb_001427_220--Hb_101034_020 Hb_013786_010 Hb_013786_010 Hb_001427_220--Hb_013786_010 Hb_168509_020 Hb_168509_020 Hb_001427_220--Hb_168509_020 Hb_148121_030 Hb_148121_030 Hb_001427_220--Hb_148121_030 Hb_136546_010--Hb_001388_020 Hb_002811_330 Hb_002811_330 Hb_136546_010--Hb_002811_330 Hb_040963_010 Hb_040963_010 Hb_136546_010--Hb_040963_010 Hb_136546_010--Hb_148121_030 Hb_079158_010 Hb_079158_010 Hb_136546_010--Hb_079158_010 Hb_001388_020--Hb_013786_010 Hb_001388_020--Hb_040963_010 Hb_001388_020--Hb_148121_030 Hb_107809_010 Hb_107809_010 Hb_001388_020--Hb_107809_010 Hb_011038_020 Hb_011038_020 Hb_101034_020--Hb_011038_020 Hb_101034_020--Hb_168509_020 Hb_002279_020 Hb_002279_020 Hb_101034_020--Hb_002279_020 Hb_009780_010 Hb_009780_010 Hb_101034_020--Hb_009780_010 Hb_092458_010 Hb_092458_010 Hb_101034_020--Hb_092458_010 Hb_029576_100 Hb_029576_100 Hb_013786_010--Hb_029576_100 Hb_000417_250 Hb_000417_250 Hb_013786_010--Hb_000417_250 Hb_000261_370 Hb_000261_370 Hb_013786_010--Hb_000261_370 Hb_013786_010--Hb_168509_020 Hb_127661_010 Hb_127661_010 Hb_013786_010--Hb_127661_010 Hb_168509_020--Hb_011038_020 Hb_168509_020--Hb_000417_250 Hb_094439_010 Hb_094439_010 Hb_168509_020--Hb_094439_010 Hb_168509_020--Hb_029576_100 Hb_148121_030--Hb_040963_010 Hb_120268_010 Hb_120268_010 Hb_148121_030--Hb_120268_010 Hb_005618_110 Hb_005618_110 Hb_148121_030--Hb_005618_110 Hb_000203_060 Hb_000203_060 Hb_148121_030--Hb_000203_060 Hb_002740_170 Hb_002740_170 Hb_148121_030--Hb_002740_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.4513 1.88458 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.36058 1.16348

CAGE analysis