Hb_002279_020

Information

Type -
Description -
Location Contig2279: 17781-18083
Sequence    

Annotation

kegg
ID pop:POPTR_0009s03100g
description POPTRDRAFT_558125; hypothetical protein
nr
ID XP_002314207.1
description hypothetical protein POPTR_0009s03100g [Populus trichocarpa]
swissprot
ID Q39224
description Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1
trembl
ID B9HPP5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s03100g PE=3 SV=1
Gene Ontology
ID GO:0016706
description protein srg1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002279_020 0.0 - - hypothetical protein POPTR_0009s03100g [Populus trichocarpa]
2 Hb_101034_020 0.1606601329 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
3 Hb_092458_010 0.1716670179 - - calmodulin binding protein, putative [Ricinus communis]
4 Hb_018633_010 0.1895717612 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_140000_010 0.1920812931 - - receptor-kinase, putative [Ricinus communis]
6 Hb_005599_020 0.1924490992 - - Protein MLO, putative [Ricinus communis]
7 Hb_086614_010 0.1949537686 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X1 [Jatropha curcas]
8 Hb_034585_070 0.2073247734 - - Polyneuridine-aldehyde esterase precursor, putative [Ricinus communis]
9 Hb_011038_020 0.207551011 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001631_110 0.2118867451 - - PREDICTED: LOW QUALITY PROTEIN: gamma-glutamyltranspeptidase 1-like [Populus euphratica]
11 Hb_010091_030 0.2125376367 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
12 Hb_003349_020 0.2138391076 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Beta vulgaris subsp. vulgaris]
13 Hb_168509_020 0.2147928732 - - macrophage migration inhibitory factor family protein [Populus trichocarpa]
14 Hb_000111_240 0.2202296703 - - PREDICTED: glutamate receptor 2.8-like [Elaeis guineensis]
15 Hb_000417_270 0.2203443413 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005433_030 0.222895876 transcription factor TF Family: MYB unnamed protein product [Vitis vinifera]
17 Hb_000732_160 0.2323723227 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
18 Hb_002107_110 0.2361160537 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 6 isoform X1 [Jatropha curcas]
19 Hb_004241_170 0.237924442 - - PREDICTED: uncharacterized protein LOC105633220 [Jatropha curcas]
20 Hb_008341_010 0.2405040069 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002279_020 Hb_002279_020 Hb_101034_020 Hb_101034_020 Hb_002279_020--Hb_101034_020 Hb_092458_010 Hb_092458_010 Hb_002279_020--Hb_092458_010 Hb_018633_010 Hb_018633_010 Hb_002279_020--Hb_018633_010 Hb_140000_010 Hb_140000_010 Hb_002279_020--Hb_140000_010 Hb_005599_020 Hb_005599_020 Hb_002279_020--Hb_005599_020 Hb_086614_010 Hb_086614_010 Hb_002279_020--Hb_086614_010 Hb_011038_020 Hb_011038_020 Hb_101034_020--Hb_011038_020 Hb_168509_020 Hb_168509_020 Hb_101034_020--Hb_168509_020 Hb_001427_220 Hb_001427_220 Hb_101034_020--Hb_001427_220 Hb_009780_010 Hb_009780_010 Hb_101034_020--Hb_009780_010 Hb_101034_020--Hb_092458_010 Hb_003077_060 Hb_003077_060 Hb_092458_010--Hb_003077_060 Hb_002107_110 Hb_002107_110 Hb_092458_010--Hb_002107_110 Hb_005433_030 Hb_005433_030 Hb_092458_010--Hb_005433_030 Hb_002615_010 Hb_002615_010 Hb_092458_010--Hb_002615_010 Hb_092458_010--Hb_018633_010 Hb_002010_020 Hb_002010_020 Hb_092458_010--Hb_002010_020 Hb_000111_240 Hb_000111_240 Hb_018633_010--Hb_000111_240 Hb_018633_010--Hb_140000_010 Hb_018633_010--Hb_086614_010 Hb_001581_040 Hb_001581_040 Hb_018633_010--Hb_001581_040 Hb_018633_010--Hb_005599_020 Hb_077694_010 Hb_077694_010 Hb_018633_010--Hb_077694_010 Hb_034585_070 Hb_034585_070 Hb_140000_010--Hb_034585_070 Hb_140000_010--Hb_005599_020 Hb_140000_010--Hb_000111_240 Hb_031685_010 Hb_031685_010 Hb_140000_010--Hb_031685_010 Hb_006789_030 Hb_006789_030 Hb_140000_010--Hb_006789_030 Hb_005599_020--Hb_034585_070 Hb_065256_010 Hb_065256_010 Hb_005599_020--Hb_065256_010 Hb_000035_140 Hb_000035_140 Hb_005599_020--Hb_000035_140 Hb_005599_020--Hb_000111_240 Hb_086614_010--Hb_077694_010 Hb_086614_010--Hb_000111_240 Hb_006615_060 Hb_006615_060 Hb_086614_010--Hb_006615_060 Hb_074672_010 Hb_074672_010 Hb_086614_010--Hb_074672_010 Hb_164146_020 Hb_164146_020 Hb_086614_010--Hb_164146_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.33761 2.05859 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.266499 0.446463

CAGE analysis