Hb_164146_020

Information

Type -
Description -
Location Contig164146: 3020-3889
Sequence    

Annotation

kegg
ID rcu:RCOM_1213020
description metal ion binding protein, putative
nr
ID XP_002524590.1
description metal ion binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SF21
description Metal ion binding protein, putative OS=Ricinus communis GN=RCOM_1213020 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15092: 2916-3859
cDNA
(Sanger)
(ID:Location)		 002_N24.ab1: 3316-3859 , 031_B14.ab1: 3316-3859 , 036_L17.ab1: 3316-3859

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164146_020 0.0 - - metal ion binding protein, putative [Ricinus communis]
2 Hb_006615_060 0.0886399005 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001310_010 0.1105671587 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type [Jatropha curcas]
4 Hb_008202_020 0.1222434136 - - receptor serine/threonine kinase, putative [Ricinus communis]
5 Hb_120011_010 0.1343844747 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
6 Hb_086614_010 0.1357110309 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X1 [Jatropha curcas]
7 Hb_002311_160 0.1372789429 transcription factor TF Family: ARR-B sensor histidine kinase, putative [Ricinus communis]
8 Hb_074672_010 0.1456706935 - - receptor serine/threonine kinase, putative [Ricinus communis]
9 Hb_006907_020 0.1481210801 - - 1-amino-cyclopropane-1-carboxylic acid oxidase 3 [Manihot esculenta]
10 Hb_010091_030 0.1490551036 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
11 Hb_000959_240 0.150383879 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
12 Hb_077694_010 0.1548106782 - - uncharacterized protein LOC100305624 [Glycine max]
13 Hb_001153_250 0.154876428 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
14 Hb_029664_010 0.1553898769 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_002010_020 0.1573568769 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
16 Hb_002960_100 0.1575180774 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
17 Hb_001619_140 0.1592094992 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
18 Hb_001660_080 0.1649087272 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
19 Hb_000172_410 0.1651727254 - - metal ion binding protein, putative [Ricinus communis]
20 Hb_004899_360 0.1659923352 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]

Gene co-expression network

sample Hb_164146_020 Hb_164146_020 Hb_006615_060 Hb_006615_060 Hb_164146_020--Hb_006615_060 Hb_001310_010 Hb_001310_010 Hb_164146_020--Hb_001310_010 Hb_008202_020 Hb_008202_020 Hb_164146_020--Hb_008202_020 Hb_120011_010 Hb_120011_010 Hb_164146_020--Hb_120011_010 Hb_086614_010 Hb_086614_010 Hb_164146_020--Hb_086614_010 Hb_002311_160 Hb_002311_160 Hb_164146_020--Hb_002311_160 Hb_001153_250 Hb_001153_250 Hb_006615_060--Hb_001153_250 Hb_005381_010 Hb_005381_010 Hb_006615_060--Hb_005381_010 Hb_074672_010 Hb_074672_010 Hb_006615_060--Hb_074672_010 Hb_077694_010 Hb_077694_010 Hb_006615_060--Hb_077694_010 Hb_006615_060--Hb_120011_010 Hb_001999_170 Hb_001999_170 Hb_001310_010--Hb_001999_170 Hb_001310_010--Hb_120011_010 Hb_002960_100 Hb_002960_100 Hb_001310_010--Hb_002960_100 Hb_004612_020 Hb_004612_020 Hb_001310_010--Hb_004612_020 Hb_010964_010 Hb_010964_010 Hb_001310_010--Hb_010964_010 Hb_004899_360 Hb_004899_360 Hb_008202_020--Hb_004899_360 Hb_001619_140 Hb_001619_140 Hb_008202_020--Hb_001619_140 Hb_002010_020 Hb_002010_020 Hb_008202_020--Hb_002010_020 Hb_004109_240 Hb_004109_240 Hb_008202_020--Hb_004109_240 Hb_154466_010 Hb_154466_010 Hb_008202_020--Hb_154466_010 Hb_121540_010 Hb_121540_010 Hb_008202_020--Hb_121540_010 Hb_120011_010--Hb_074672_010 Hb_120011_010--Hb_001619_140 Hb_120011_010--Hb_077694_010 Hb_120011_010--Hb_008202_020 Hb_018633_010 Hb_018633_010 Hb_086614_010--Hb_018633_010 Hb_086614_010--Hb_077694_010 Hb_000111_240 Hb_000111_240 Hb_086614_010--Hb_000111_240 Hb_086614_010--Hb_006615_060 Hb_086614_010--Hb_074672_010 Hb_001660_080 Hb_001660_080 Hb_002311_160--Hb_001660_080 Hb_002400_020 Hb_002400_020 Hb_002311_160--Hb_002400_020 Hb_000172_410 Hb_000172_410 Hb_002311_160--Hb_000172_410 Hb_002311_160--Hb_006615_060 Hb_002311_160--Hb_005381_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.833321 558.504 484.632 58.6948 1.48374 3.99169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.873 1.74005 0.713455 12.6829 99.7353

CAGE analysis