Hb_002400_020

Information

Type -
Description -
Location Contig2400: 12693-15131
Sequence    

Annotation

kegg
ID pop:POPTR_0006s27070g
description POPTRDRAFT_561902; hypothetical protein
nr
ID XP_012076558.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
swissprot
ID Q8RWZ5
description G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1
trembl
ID A0A067KMS7
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_07161 PE=3 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase sd2-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25144: 15480-15664 , PASA_asmbl_25145: 15760-15964
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_020 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
2 Hb_000172_410 0.0979012066 - - metal ion binding protein, putative [Ricinus communis]
3 Hb_002374_200 0.1128116399 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
4 Hb_001660_080 0.1199341973 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
5 Hb_121540_010 0.1235292157 - - PREDICTED: UDP-glycosyltransferase 88A1-like [Jatropha curcas]
6 Hb_002311_160 0.1238130772 transcription factor TF Family: ARR-B sensor histidine kinase, putative [Ricinus communis]
7 Hb_005381_010 0.1241850348 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
8 Hb_000069_530 0.1311925117 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
9 Hb_003060_150 0.1338389622 - - UDP-glucosyltransferase, putative [Ricinus communis]
10 Hb_120011_010 0.1374259675 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
11 Hb_077694_010 0.1391084141 - - uncharacterized protein LOC100305624 [Glycine max]
12 Hb_000836_420 0.1400540196 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
13 Hb_000627_130 0.1407312703 - - Polcalcin Jun o, putative [Ricinus communis]
14 Hb_109591_010 0.1414317255 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
15 Hb_004612_020 0.1416151996 - - PREDICTED: tetraspanin-8-like [Populus euphratica]
16 Hb_004109_240 0.1441778635 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
17 Hb_000592_070 0.1463402708 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
18 Hb_001310_010 0.1475541887 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type [Jatropha curcas]
19 Hb_004899_010 0.1486755876 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
20 Hb_182167_010 0.1511000071 - - hypothetical protein PHAVU_001G0486001g, partial [Phaseolus vulgaris]

Gene co-expression network

sample Hb_002400_020 Hb_002400_020 Hb_000172_410 Hb_000172_410 Hb_002400_020--Hb_000172_410 Hb_002374_200 Hb_002374_200 Hb_002400_020--Hb_002374_200 Hb_001660_080 Hb_001660_080 Hb_002400_020--Hb_001660_080 Hb_121540_010 Hb_121540_010 Hb_002400_020--Hb_121540_010 Hb_002311_160 Hb_002311_160 Hb_002400_020--Hb_002311_160 Hb_005381_010 Hb_005381_010 Hb_002400_020--Hb_005381_010 Hb_003078_070 Hb_003078_070 Hb_000172_410--Hb_003078_070 Hb_001369_670 Hb_001369_670 Hb_000172_410--Hb_001369_670 Hb_000172_410--Hb_121540_010 Hb_004109_240 Hb_004109_240 Hb_000172_410--Hb_004109_240 Hb_000172_410--Hb_001660_080 Hb_004551_010 Hb_004551_010 Hb_002374_200--Hb_004551_010 Hb_000134_260 Hb_000134_260 Hb_002374_200--Hb_000134_260 Hb_000454_080 Hb_000454_080 Hb_002374_200--Hb_000454_080 Hb_002374_200--Hb_001660_080 Hb_000322_160 Hb_000322_160 Hb_002374_200--Hb_000322_160 Hb_001660_080--Hb_005381_010 Hb_000836_420 Hb_000836_420 Hb_001660_080--Hb_000836_420 Hb_001660_080--Hb_121540_010 Hb_003060_150 Hb_003060_150 Hb_001660_080--Hb_003060_150 Hb_000035_140 Hb_000035_140 Hb_001660_080--Hb_000035_140 Hb_189208_060 Hb_189208_060 Hb_001660_080--Hb_189208_060 Hb_121540_010--Hb_003060_150 Hb_121540_010--Hb_005381_010 Hb_000069_530 Hb_000069_530 Hb_121540_010--Hb_000069_530 Hb_028486_010 Hb_028486_010 Hb_121540_010--Hb_028486_010 Hb_077694_010 Hb_077694_010 Hb_121540_010--Hb_077694_010 Hb_002311_160--Hb_001660_080 Hb_002311_160--Hb_000172_410 Hb_006615_060 Hb_006615_060 Hb_002311_160--Hb_006615_060 Hb_002311_160--Hb_005381_010 Hb_164146_020 Hb_164146_020 Hb_002311_160--Hb_164146_020 Hb_005381_010--Hb_000069_530 Hb_005381_010--Hb_003060_150 Hb_182167_010 Hb_182167_010 Hb_005381_010--Hb_182167_010 Hb_005381_010--Hb_077694_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0597827 22.2269 23.2161 8.04685 0 0.0354951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.108895 1.45669 0 0.748725 2.60917

CAGE analysis