Hb_000454_080

Information

Type -
Description -
Location Contig454: 48422-62184
Sequence    

Annotation

kegg
ID pop:POPTR_0004s17020g
description POPTRDRAFT_713160; arginine decarboxylase family protein
nr
ID XP_012084432.1
description PREDICTED: arginine decarboxylase [Jatropha curcas]
swissprot
ID Q43075
description Arginine decarboxylase OS=Pisum sativum PE=2 SV=1
trembl
ID A0A067JXU8
description Arginine decarboxylase OS=Jatropha curcas GN=JCGZ_19638 PE=3 SV=1
Gene Ontology
ID GO:0008792
description arginine decarboxylase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43341: 48067-51104
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000454_080 0.0 - - PREDICTED: arginine decarboxylase [Jatropha curcas]
2 Hb_000071_090 0.1022769049 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
3 Hb_000836_420 0.1037506798 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_000495_050 0.1123333948 - - hypothetical protein JCGZ_25174 [Jatropha curcas]
5 Hb_000985_140 0.1159104701 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
6 Hb_008406_070 0.1192336171 - - PREDICTED: probable protein phosphatase 2C 58 [Jatropha curcas]
7 Hb_001769_120 0.1280330953 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
8 Hb_003078_070 0.1280952159 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g25290 [Jatropha curcas]
9 Hb_000152_410 0.1301122271 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
10 Hb_002374_200 0.1312547066 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
11 Hb_001160_050 0.1330155286 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
12 Hb_002374_030 0.1331054263 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
13 Hb_189208_060 0.1339802082 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
14 Hb_028487_040 0.1343751947 - - hypothetical protein POPTR_0010s11910g [Populus trichocarpa]
15 Hb_001623_410 0.1397643009 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
16 Hb_004837_200 0.1405018024 - - hypothetical protein POPTR_0001s26450g [Populus trichocarpa]
17 Hb_001660_080 0.1409719613 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
18 Hb_004970_070 0.1420310506 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
19 Hb_007904_290 0.142956964 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
20 Hb_000359_260 0.1463199433 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]

Gene co-expression network

sample Hb_000454_080 Hb_000454_080 Hb_000071_090 Hb_000071_090 Hb_000454_080--Hb_000071_090 Hb_000836_420 Hb_000836_420 Hb_000454_080--Hb_000836_420 Hb_000495_050 Hb_000495_050 Hb_000454_080--Hb_000495_050 Hb_000985_140 Hb_000985_140 Hb_000454_080--Hb_000985_140 Hb_008406_070 Hb_008406_070 Hb_000454_080--Hb_008406_070 Hb_001769_120 Hb_001769_120 Hb_000454_080--Hb_001769_120 Hb_000071_090--Hb_008406_070 Hb_003078_070 Hb_003078_070 Hb_000071_090--Hb_003078_070 Hb_002374_030 Hb_002374_030 Hb_000071_090--Hb_002374_030 Hb_000071_090--Hb_001769_120 Hb_189208_060 Hb_189208_060 Hb_000071_090--Hb_189208_060 Hb_000071_090--Hb_000985_140 Hb_001160_050 Hb_001160_050 Hb_000836_420--Hb_001160_050 Hb_000836_420--Hb_189208_060 Hb_001660_080 Hb_001660_080 Hb_000836_420--Hb_001660_080 Hb_000836_420--Hb_002374_030 Hb_121540_010 Hb_121540_010 Hb_000836_420--Hb_121540_010 Hb_000836_420--Hb_003078_070 Hb_005814_010 Hb_005814_010 Hb_000495_050--Hb_005814_010 Hb_002107_110 Hb_002107_110 Hb_000495_050--Hb_002107_110 Hb_005867_030 Hb_005867_030 Hb_000495_050--Hb_005867_030 Hb_000495_050--Hb_000985_140 Hb_002030_180 Hb_002030_180 Hb_000495_050--Hb_002030_180 Hb_004393_030 Hb_004393_030 Hb_000985_140--Hb_004393_030 Hb_000985_140--Hb_003078_070 Hb_021254_020 Hb_021254_020 Hb_000985_140--Hb_021254_020 Hb_001247_160 Hb_001247_160 Hb_000985_140--Hb_001247_160 Hb_000032_090 Hb_000032_090 Hb_000985_140--Hb_000032_090 Hb_008406_070--Hb_002374_030 Hb_138086_010 Hb_138086_010 Hb_008406_070--Hb_138086_010 Hb_000878_090 Hb_000878_090 Hb_008406_070--Hb_000878_090 Hb_011915_020 Hb_011915_020 Hb_008406_070--Hb_011915_020 Hb_008406_070--Hb_001160_050 Hb_000152_410 Hb_000152_410 Hb_001769_120--Hb_000152_410 Hb_009907_020 Hb_009907_020 Hb_001769_120--Hb_009907_020 Hb_028487_040 Hb_028487_040 Hb_001769_120--Hb_028487_040 Hb_001769_120--Hb_001160_050 Hb_001769_120--Hb_000836_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.821196 224.563 307.2 114.893 0.0836723 0.266065
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.9822 7.05172 5.40128 39.8956 57.408

CAGE analysis