Hb_005867_030

Information

Type -
Description -
Location Contig5867: 26201-27623
Sequence    

Annotation

kegg
ID tcc:TCM_015429
description hypothetical protein
nr
ID XP_012086462.1
description PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
swissprot
ID Q9M160
description Uncharacterized protein At4g00950 OS=Arabidopsis thaliana GN=At4g00950 PE=2 SV=1
trembl
ID A0A067K1V7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23924 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49996: 26181-27558 , PASA_asmbl_49997: 26233-27543
cDNA
(Sanger)
(ID:Location)		 014_A02.ab1: 26233-26514

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005867_030 0.0 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
2 Hb_000237_070 0.0835578296 - - Purple acid phosphatase precursor, putative [Ricinus communis]
3 Hb_005463_070 0.0855125633 - - calcium ion binding protein, putative [Ricinus communis]
4 Hb_001619_020 0.0856854386 - - LRR receptor-like kinase family protein [Medicago truncatula]
5 Hb_003077_060 0.1031598581 - - PREDICTED: 3-oxo-Delta(4,5)-steroid 5-beta-reductase-like [Jatropha curcas]
6 Hb_000495_050 0.1128225376 - - hypothetical protein JCGZ_25174 [Jatropha curcas]
7 Hb_000318_050 0.1129713633 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
8 Hb_000054_140 0.1144440284 - - PREDICTED: MACPF domain-containing protein CAD1 [Jatropha curcas]
9 Hb_009476_070 0.1160500281 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
10 Hb_003387_080 0.1161453859 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
11 Hb_000985_140 0.1183130723 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
12 Hb_004837_110 0.1195671777 - - PREDICTED: MATE efflux family protein 1 isoform X1 [Jatropha curcas]
13 Hb_000382_030 0.1197035642 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
14 Hb_012098_180 0.1223453919 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
15 Hb_002010_100 0.1228866425 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
16 Hb_002890_320 0.1247204655 - - PREDICTED: uncharacterized protein LOC105631579 [Jatropha curcas]
17 Hb_001377_130 0.1252392318 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
18 Hb_000031_160 0.1285631254 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
19 Hb_000365_180 0.1302711954 - - PREDICTED: protein LURP-one-related 8-like [Pyrus x bretschneideri]
20 Hb_007416_170 0.1310017751 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]

Gene co-expression network

sample Hb_005867_030 Hb_005867_030 Hb_000237_070 Hb_000237_070 Hb_005867_030--Hb_000237_070 Hb_005463_070 Hb_005463_070 Hb_005867_030--Hb_005463_070 Hb_001619_020 Hb_001619_020 Hb_005867_030--Hb_001619_020 Hb_003077_060 Hb_003077_060 Hb_005867_030--Hb_003077_060 Hb_000495_050 Hb_000495_050 Hb_005867_030--Hb_000495_050 Hb_000318_050 Hb_000318_050 Hb_005867_030--Hb_000318_050 Hb_031862_020 Hb_031862_020 Hb_000237_070--Hb_031862_020 Hb_000382_030 Hb_000382_030 Hb_000237_070--Hb_000382_030 Hb_167272_010 Hb_167272_010 Hb_000237_070--Hb_167272_010 Hb_000237_070--Hb_000318_050 Hb_001377_130 Hb_001377_130 Hb_000237_070--Hb_001377_130 Hb_005463_070--Hb_000318_050 Hb_002010_100 Hb_002010_100 Hb_005463_070--Hb_002010_100 Hb_005016_080 Hb_005016_080 Hb_005463_070--Hb_005016_080 Hb_003387_080 Hb_003387_080 Hb_005463_070--Hb_003387_080 Hb_002361_010 Hb_002361_010 Hb_005463_070--Hb_002361_010 Hb_000031_160 Hb_000031_160 Hb_001619_020--Hb_000031_160 Hb_001635_230 Hb_001635_230 Hb_001619_020--Hb_001635_230 Hb_001619_020--Hb_000237_070 Hb_001619_020--Hb_005463_070 Hb_005628_050 Hb_005628_050 Hb_001619_020--Hb_005628_050 Hb_002107_110 Hb_002107_110 Hb_003077_060--Hb_002107_110 Hb_092458_010 Hb_092458_010 Hb_003077_060--Hb_092458_010 Hb_007416_170 Hb_007416_170 Hb_003077_060--Hb_007416_170 Hb_003077_060--Hb_001619_020 Hb_003077_060--Hb_000237_070 Hb_005814_010 Hb_005814_010 Hb_000495_050--Hb_005814_010 Hb_000495_050--Hb_002107_110 Hb_000454_080 Hb_000454_080 Hb_000495_050--Hb_000454_080 Hb_000985_140 Hb_000985_140 Hb_000495_050--Hb_000985_140 Hb_002030_180 Hb_002030_180 Hb_000495_050--Hb_002030_180 Hb_000318_050--Hb_003387_080 Hb_000318_050--Hb_000382_030 Hb_001160_020 Hb_001160_020 Hb_000318_050--Hb_001160_020 Hb_000318_050--Hb_005016_080 Hb_000318_050--Hb_002010_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0235803 53.0813 44.8455 22.8509 0.0189512 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.259187 0.237851 0 17.4948 14.8631

CAGE analysis