Hb_000318_050

Information

Type -
Description -
Location Contig318: 46633-51147
Sequence    

Annotation

kegg
ID rcu:RCOM_0774220
description peptidyl-prolyl cis-trans isomerase d, ppid, putative (EC:5.2.1.8)
nr
ID XP_012072447.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
swissprot
ID Q9C566
description Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1
trembl
ID A0A067L193
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04878 PE=4 SV=1
Gene Ontology
ID GO:0005829
description peptidyl-prolyl cis-trans isomerase cyp40

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33490: 46767-50838 , PASA_asmbl_33491: 46767-50838 , PASA_asmbl_33492: 50845-51086
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_050 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
2 Hb_005463_070 0.0762225539 - - calcium ion binding protein, putative [Ricinus communis]
3 Hb_003387_080 0.0863230648 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
4 Hb_000382_030 0.0880407144 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
5 Hb_001160_020 0.0891969206 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
6 Hb_005016_080 0.0920964841 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
7 Hb_002010_100 0.0921237069 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
8 Hb_000237_070 0.0946310625 - - Purple acid phosphatase precursor, putative [Ricinus communis]
9 Hb_001377_130 0.1074956895 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
10 Hb_002361_010 0.1085158158 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
11 Hb_031862_020 0.1125612555 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
12 Hb_005867_030 0.1129713633 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
13 Hb_007747_100 0.1130383968 - - PREDICTED: probable F-box protein At1g60180 [Jatropha curcas]
14 Hb_006269_010 0.1131051358 - - hypothetical protein JCGZ_21552 [Jatropha curcas]
15 Hb_023344_130 0.1197063619 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
16 Hb_000477_110 0.1200327829 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
17 Hb_007483_080 0.1211586345 - - hypothetical protein RCOM_0634810 [Ricinus communis]
18 Hb_006483_090 0.1238780224 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
19 Hb_000092_030 0.1243090605 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
20 Hb_001538_050 0.1259170008 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]

Gene co-expression network

sample Hb_000318_050 Hb_000318_050 Hb_005463_070 Hb_005463_070 Hb_000318_050--Hb_005463_070 Hb_003387_080 Hb_003387_080 Hb_000318_050--Hb_003387_080 Hb_000382_030 Hb_000382_030 Hb_000318_050--Hb_000382_030 Hb_001160_020 Hb_001160_020 Hb_000318_050--Hb_001160_020 Hb_005016_080 Hb_005016_080 Hb_000318_050--Hb_005016_080 Hb_002010_100 Hb_002010_100 Hb_000318_050--Hb_002010_100 Hb_005463_070--Hb_002010_100 Hb_005867_030 Hb_005867_030 Hb_005463_070--Hb_005867_030 Hb_005463_070--Hb_005016_080 Hb_005463_070--Hb_003387_080 Hb_002361_010 Hb_002361_010 Hb_005463_070--Hb_002361_010 Hb_003387_080--Hb_005016_080 Hb_002849_120 Hb_002849_120 Hb_003387_080--Hb_002849_120 Hb_003387_080--Hb_001160_020 Hb_006269_010 Hb_006269_010 Hb_003387_080--Hb_006269_010 Hb_001377_130 Hb_001377_130 Hb_000382_030--Hb_001377_130 Hb_000237_070 Hb_000237_070 Hb_000382_030--Hb_000237_070 Hb_000085_220 Hb_000085_220 Hb_000382_030--Hb_000085_220 Hb_031862_020 Hb_031862_020 Hb_000382_030--Hb_031862_020 Hb_001123_170 Hb_001123_170 Hb_000382_030--Hb_001123_170 Hb_007747_100 Hb_007747_100 Hb_001160_020--Hb_007747_100 Hb_003849_030 Hb_003849_030 Hb_001160_020--Hb_003849_030 Hb_001160_020--Hb_002849_120 Hb_001153_090 Hb_001153_090 Hb_001160_020--Hb_001153_090 Hb_023344_130 Hb_023344_130 Hb_001160_020--Hb_023344_130 Hb_005016_080--Hb_002010_100 Hb_005016_080--Hb_002361_010 Hb_005016_080--Hb_001160_020 Hb_007483_080 Hb_007483_080 Hb_002010_100--Hb_007483_080 Hb_002010_100--Hb_002361_010 Hb_000365_180 Hb_000365_180 Hb_002010_100--Hb_000365_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0687591 31.9119 28.7864 15.0192 0.201023 0.0407342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.019714 0.633831 17.0279 15.3703

CAGE analysis