Hb_007483_080

Information

Type -
Description -
Location Contig7483: 51908-55124
Sequence    

Annotation

kegg
ID rcu:RCOM_0634810
description hypothetical protein
nr
ID XP_002519755.1
description hypothetical protein RCOM_0634810 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S186
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0634810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56762: 51887-55119 , PASA_asmbl_56763: 54020-54770 , PASA_asmbl_56764: 52371-52724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007483_080 0.0 - - hypothetical protein RCOM_0634810 [Ricinus communis]
2 Hb_002010_100 0.0636104697 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
3 Hb_000007_440 0.0724787499 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
4 Hb_002361_010 0.0931899241 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
5 Hb_002849_180 0.1030107159 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
6 Hb_001158_120 0.1033903233 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
7 Hb_000500_230 0.1037998852 - - hypothetical protein RCOM_0634810 [Ricinus communis]
8 Hb_006483_090 0.1044997021 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
9 Hb_001989_070 0.1054124305 - - PREDICTED: uncharacterized calcium-binding protein At1g02270 [Jatropha curcas]
10 Hb_006970_170 0.1060927734 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
11 Hb_005016_080 0.1071610653 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
12 Hb_005463_070 0.1123845613 - - calcium ion binding protein, putative [Ricinus communis]
13 Hb_005999_020 0.1135424197 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
14 Hb_001160_020 0.1165172653 transcription factor TF Family: NF-YA Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]
15 Hb_003849_030 0.1177391341 - - hypothetical protein AALP_AA5G029900 [Arabis alpina]
16 Hb_001179_010 0.1178196775 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
17 Hb_001357_060 0.1183675887 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 18-like [Cicer arietinum]
18 Hb_007894_120 0.1196023939 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
19 Hb_000477_110 0.1211493806 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
20 Hb_000318_050 0.1211586345 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007483_080 Hb_007483_080 Hb_002010_100 Hb_002010_100 Hb_007483_080--Hb_002010_100 Hb_000007_440 Hb_000007_440 Hb_007483_080--Hb_000007_440 Hb_002361_010 Hb_002361_010 Hb_007483_080--Hb_002361_010 Hb_002849_180 Hb_002849_180 Hb_007483_080--Hb_002849_180 Hb_001158_120 Hb_001158_120 Hb_007483_080--Hb_001158_120 Hb_000500_230 Hb_000500_230 Hb_007483_080--Hb_000500_230 Hb_002010_100--Hb_002361_010 Hb_005016_080 Hb_005016_080 Hb_002010_100--Hb_005016_080 Hb_005463_070 Hb_005463_070 Hb_002010_100--Hb_005463_070 Hb_000318_050 Hb_000318_050 Hb_002010_100--Hb_000318_050 Hb_000365_180 Hb_000365_180 Hb_002010_100--Hb_000365_180 Hb_000007_440--Hb_002849_180 Hb_000007_440--Hb_002010_100 Hb_006483_090 Hb_006483_090 Hb_000007_440--Hb_006483_090 Hb_000007_440--Hb_001158_120 Hb_006970_170 Hb_006970_170 Hb_000007_440--Hb_006970_170 Hb_002361_010--Hb_005016_080 Hb_002361_010--Hb_005463_070 Hb_002361_010--Hb_000318_050 Hb_018212_010 Hb_018212_010 Hb_002361_010--Hb_018212_010 Hb_000320_450 Hb_000320_450 Hb_002849_180--Hb_000320_450 Hb_002849_180--Hb_006483_090 Hb_000613_250 Hb_000613_250 Hb_002849_180--Hb_000613_250 Hb_012308_050 Hb_012308_050 Hb_002849_180--Hb_012308_050 Hb_011381_070 Hb_011381_070 Hb_001158_120--Hb_011381_070 Hb_000366_050 Hb_000366_050 Hb_001158_120--Hb_000366_050 Hb_001294_040 Hb_001294_040 Hb_001158_120--Hb_001294_040 Hb_002609_290 Hb_002609_290 Hb_001158_120--Hb_002609_290 Hb_005539_100 Hb_005539_100 Hb_001158_120--Hb_005539_100 Hb_000500_230--Hb_006970_170 Hb_000010_370 Hb_000010_370 Hb_000500_230--Hb_000010_370 Hb_000260_480 Hb_000260_480 Hb_000500_230--Hb_000260_480 Hb_007894_120 Hb_007894_120 Hb_000500_230--Hb_007894_120 Hb_002871_110 Hb_002871_110 Hb_000500_230--Hb_002871_110 Hb_017491_010 Hb_017491_010 Hb_000500_230--Hb_017491_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.416196 65.7726 74.3532 42.9057 1.6702 2.36275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.286007 1.22742 0.541102 28.3923 46.9777

CAGE analysis