Hb_011381_070

Information

Type transcription factor
Description TF Family: DBB
Location Contig11381: 28066-29621
Sequence    

Annotation

kegg
ID tcc:TCM_036860
description CONSTANS-like 4
nr
ID XP_012076376.1
description PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
swissprot
ID Q940T9
description Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2
trembl
ID A0A067KBG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07048 PE=4 SV=1
Gene Ontology
ID GO:0003700
description constans-like 5 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04142: 28194-29722
cDNA
(Sanger)
(ID:Location)		 026_E09.ab1: 28216-28510 , 033_B11.ab1: 28216-28748

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011381_070 0.0 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
2 Hb_000366_050 0.0767692451 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
3 Hb_001158_120 0.0775808482 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
4 Hb_000035_490 0.086757857 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
5 Hb_002609_290 0.0919609304 - - PREDICTED: non-specific phospholipase C1 [Jatropha curcas]
6 Hb_001294_040 0.0940626037 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
7 Hb_132840_020 0.0986367846 - - PREDICTED: protein LHY [Jatropha curcas]
8 Hb_005539_100 0.1011094664 - - nucleoside transporter, putative [Ricinus communis]
9 Hb_000329_790 0.1130999272 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]
10 Hb_001021_100 0.1161840985 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
11 Hb_014361_170 0.1199147102 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 37 [Jatropha curcas]
12 Hb_000086_640 0.124908972 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
13 Hb_001627_010 0.1250028011 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
14 Hb_000111_390 0.125400944 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
15 Hb_001863_340 0.1290305719 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
16 Hb_001386_020 0.1291759565 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007290_070 0.1354753211 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
18 Hb_001102_090 0.1366986034 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
19 Hb_005214_070 0.1378536915 - - PREDICTED: fatty acid amide hydrolase [Jatropha curcas]
20 Hb_000748_110 0.1383465641 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]

Gene co-expression network

sample Hb_011381_070 Hb_011381_070 Hb_000366_050 Hb_000366_050 Hb_011381_070--Hb_000366_050 Hb_001158_120 Hb_001158_120 Hb_011381_070--Hb_001158_120 Hb_000035_490 Hb_000035_490 Hb_011381_070--Hb_000035_490 Hb_002609_290 Hb_002609_290 Hb_011381_070--Hb_002609_290 Hb_001294_040 Hb_001294_040 Hb_011381_070--Hb_001294_040 Hb_132840_020 Hb_132840_020 Hb_011381_070--Hb_132840_020 Hb_000366_050--Hb_001158_120 Hb_000366_050--Hb_002609_290 Hb_005539_100 Hb_005539_100 Hb_000366_050--Hb_005539_100 Hb_000329_790 Hb_000329_790 Hb_000366_050--Hb_000329_790 Hb_000366_050--Hb_001294_040 Hb_001158_120--Hb_001294_040 Hb_001158_120--Hb_002609_290 Hb_001158_120--Hb_005539_100 Hb_007483_080 Hb_007483_080 Hb_001158_120--Hb_007483_080 Hb_000086_640 Hb_000086_640 Hb_000035_490--Hb_000086_640 Hb_001021_100 Hb_001021_100 Hb_000035_490--Hb_001021_100 Hb_000035_490--Hb_132840_020 Hb_001863_340 Hb_001863_340 Hb_000035_490--Hb_001863_340 Hb_011671_110 Hb_011671_110 Hb_000035_490--Hb_011671_110 Hb_010812_060 Hb_010812_060 Hb_002609_290--Hb_010812_060 Hb_002997_110 Hb_002997_110 Hb_002609_290--Hb_002997_110 Hb_001627_010 Hb_001627_010 Hb_002609_290--Hb_001627_010 Hb_014361_170 Hb_014361_170 Hb_001294_040--Hb_014361_170 Hb_000008_430 Hb_000008_430 Hb_001294_040--Hb_000008_430 Hb_001294_040--Hb_000035_490 Hb_001294_050 Hb_001294_050 Hb_132840_020--Hb_001294_050 Hb_132840_020--Hb_000086_640 Hb_048476_040 Hb_048476_040 Hb_132840_020--Hb_048476_040 Hb_132840_020--Hb_001627_010 Hb_132840_020--Hb_000329_790
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1517 170.965 214.809 89.0962 17.4381 13.3355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.20242 3.5714 7.08734 57.0327 99.527

CAGE analysis