Hb_000035_490

Information

Type transcription factor
Description TF Family: DBB
Location Contig35: 454322-455786
Sequence    

Annotation

kegg
ID tcc:TCM_036860
description CONSTANS-like 4
nr
ID XP_012076376.1
description PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
swissprot
ID Q940T9
description Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2
trembl
ID A0A067KBG6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07048 PE=4 SV=1
Gene Ontology
ID GO:0005622
description constans-like 5 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36461: 454275-455841
cDNA
(Sanger)
(ID:Location)		 020_I12.ab1: 454767-455677

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_490 0.0 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
2 Hb_011381_070 0.086757857 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
3 Hb_000086_640 0.0887816394 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
4 Hb_001021_100 0.0930478221 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
5 Hb_132840_020 0.108627819 - - PREDICTED: protein LHY [Jatropha curcas]
6 Hb_001863_340 0.108981503 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
7 Hb_011671_110 0.1142797406 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
8 Hb_007290_070 0.1160719239 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
9 Hb_001102_090 0.1162971828 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
10 Hb_001386_020 0.118680357 - - conserved hypothetical protein [Ricinus communis]
11 Hb_033930_010 0.1214623375 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
12 Hb_001894_160 0.1284075994 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001294_050 0.1304148104 desease resistance Gene Name: NB-ARC Disease resistance protein RPP13, putative [Ricinus communis]
14 Hb_000318_410 0.1306550142 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
15 Hb_000753_140 0.1319976662 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
16 Hb_001294_040 0.1340879309 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
17 Hb_001627_010 0.1343020248 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
18 Hb_005214_070 0.1354867819 - - PREDICTED: fatty acid amide hydrolase [Jatropha curcas]
19 Hb_000748_110 0.1366002255 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
20 Hb_000366_050 0.1372164646 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000035_490 Hb_000035_490 Hb_011381_070 Hb_011381_070 Hb_000035_490--Hb_011381_070 Hb_000086_640 Hb_000086_640 Hb_000035_490--Hb_000086_640 Hb_001021_100 Hb_001021_100 Hb_000035_490--Hb_001021_100 Hb_132840_020 Hb_132840_020 Hb_000035_490--Hb_132840_020 Hb_001863_340 Hb_001863_340 Hb_000035_490--Hb_001863_340 Hb_011671_110 Hb_011671_110 Hb_000035_490--Hb_011671_110 Hb_000366_050 Hb_000366_050 Hb_011381_070--Hb_000366_050 Hb_001158_120 Hb_001158_120 Hb_011381_070--Hb_001158_120 Hb_002609_290 Hb_002609_290 Hb_011381_070--Hb_002609_290 Hb_001294_040 Hb_001294_040 Hb_011381_070--Hb_001294_040 Hb_011381_070--Hb_132840_020 Hb_000086_640--Hb_132840_020 Hb_015807_080 Hb_015807_080 Hb_000086_640--Hb_015807_080 Hb_033930_010 Hb_033930_010 Hb_000086_640--Hb_033930_010 Hb_005941_020 Hb_005941_020 Hb_000086_640--Hb_005941_020 Hb_000753_140 Hb_000753_140 Hb_000086_640--Hb_000753_140 Hb_001021_100--Hb_001863_340 Hb_001021_100--Hb_011381_070 Hb_001021_100--Hb_011671_110 Hb_005214_070 Hb_005214_070 Hb_001021_100--Hb_005214_070 Hb_015026_020 Hb_015026_020 Hb_001021_100--Hb_015026_020 Hb_001294_050 Hb_001294_050 Hb_132840_020--Hb_001294_050 Hb_048476_040 Hb_048476_040 Hb_132840_020--Hb_048476_040 Hb_001627_010 Hb_001627_010 Hb_132840_020--Hb_001627_010 Hb_000329_790 Hb_000329_790 Hb_132840_020--Hb_000329_790 Hb_002030_110 Hb_002030_110 Hb_001863_340--Hb_002030_110 Hb_000748_110 Hb_000748_110 Hb_001863_340--Hb_000748_110 Hb_021409_110 Hb_021409_110 Hb_001863_340--Hb_021409_110 Hb_001250_040 Hb_001250_040 Hb_001863_340--Hb_001250_040 Hb_001894_160 Hb_001894_160 Hb_011671_110--Hb_001894_160 Hb_011671_110--Hb_005941_020 Hb_011671_110--Hb_033930_010 Hb_011671_110--Hb_015026_020 Hb_001776_200 Hb_001776_200 Hb_011671_110--Hb_001776_200 Hb_005394_010 Hb_005394_010 Hb_011671_110--Hb_005394_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.97184 58.5219 76.854 29.5374 12.3446 4.44948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.2788 4.09988 5.13425 17.7095 36.8941

CAGE analysis