Hb_005941_020

Information

Type -
Description -
Location Contig5941: 41263-46435
Sequence    

Annotation

kegg
ID rcu:RCOM_0035170
description double-stranded RNA binding protein, putative
nr
ID XP_012064817.1
description PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
swissprot
ID Q9SKN2
description Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana GN=DRB2 PE=1 SV=1
trembl
ID A0A067L6J3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05514 PE=4 SV=1
Gene Ontology
ID GO:0003725
description double-stranded rna-binding protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50351: 41064-43630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005941_020 0.0 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
2 Hb_001894_160 0.069322137 - - conserved hypothetical protein [Ricinus communis]
3 Hb_033930_010 0.0727475297 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
4 Hb_011671_110 0.0750087731 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
5 Hb_015026_020 0.1040057004 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
6 Hb_000317_190 0.105185886 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
7 Hb_000086_640 0.1058399133 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
8 Hb_161901_020 0.1095791161 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
9 Hb_161549_010 0.1100346362 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001369_030 0.1101035743 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
11 Hb_000212_300 0.1157097744 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
12 Hb_000622_210 0.1164232858 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X3 [Jatropha curcas]
13 Hb_027380_210 0.1180157574 - - PREDICTED: uncharacterized protein LOC105634030 [Jatropha curcas]
14 Hb_000928_250 0.1199618463 - - calcium ion binding protein, putative [Ricinus communis]
15 Hb_047442_010 0.1208387759 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
16 Hb_015807_080 0.1210413014 - - PREDICTED: helicase protein MOM1-like [Jatropha curcas]
17 Hb_005694_130 0.1212196393 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
18 Hb_003747_050 0.1262339475 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
19 Hb_000445_210 0.1270471428 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105639010 [Jatropha curcas]
20 Hb_000609_110 0.1282899312 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_005941_020 Hb_005941_020 Hb_001894_160 Hb_001894_160 Hb_005941_020--Hb_001894_160 Hb_033930_010 Hb_033930_010 Hb_005941_020--Hb_033930_010 Hb_011671_110 Hb_011671_110 Hb_005941_020--Hb_011671_110 Hb_015026_020 Hb_015026_020 Hb_005941_020--Hb_015026_020 Hb_000317_190 Hb_000317_190 Hb_005941_020--Hb_000317_190 Hb_000086_640 Hb_000086_640 Hb_005941_020--Hb_000086_640 Hb_001894_160--Hb_011671_110 Hb_001894_160--Hb_033930_010 Hb_000928_250 Hb_000928_250 Hb_001894_160--Hb_000928_250 Hb_001894_160--Hb_015026_020 Hb_000622_210 Hb_000622_210 Hb_001894_160--Hb_000622_210 Hb_033930_010--Hb_011671_110 Hb_000318_410 Hb_000318_410 Hb_033930_010--Hb_000318_410 Hb_033930_010--Hb_000622_210 Hb_033930_010--Hb_000086_640 Hb_011671_110--Hb_015026_020 Hb_001776_200 Hb_001776_200 Hb_011671_110--Hb_001776_200 Hb_005394_010 Hb_005394_010 Hb_011671_110--Hb_005394_010 Hb_015026_020--Hb_000928_250 Hb_003106_200 Hb_003106_200 Hb_015026_020--Hb_003106_200 Hb_000076_100 Hb_000076_100 Hb_015026_020--Hb_000076_100 Hb_124951_010 Hb_124951_010 Hb_000317_190--Hb_124951_010 Hb_047442_010 Hb_047442_010 Hb_000317_190--Hb_047442_010 Hb_000317_190--Hb_001894_160 Hb_000317_190--Hb_011671_110 Hb_000317_190--Hb_015026_020 Hb_000035_490 Hb_000035_490 Hb_000086_640--Hb_000035_490 Hb_132840_020 Hb_132840_020 Hb_000086_640--Hb_132840_020 Hb_015807_080 Hb_015807_080 Hb_000086_640--Hb_015807_080 Hb_000753_140 Hb_000753_140 Hb_000086_640--Hb_000753_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.84805 20.2165 27.2041 6.56563 3.20653 3.01332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.03637 1.91111 1.99693 4.9108 9.5339

CAGE analysis