Hb_001776_200

Information

Type -
Description -
Location Contig1776: 148399-153224
Sequence    

Annotation

kegg
ID pop:POPTR_0009s02600g
description POPTRDRAFT_558178; hypothetical protein
nr
ID XP_009371398.1
description PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
swissprot
ID Q8W207
description COP9 signalosome complex subunit 2 OS=Arabidopsis thaliana GN=CSN2 PE=1 SV=1
trembl
ID A0A067FJN1
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014143mg PE=4 SV=1
Gene Ontology
ID GO:0005515
description cop9 signalosome complex subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17088: 150093-150331
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001776_200 0.0 - - PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
2 Hb_011671_110 0.0924714748 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
3 Hb_001414_050 0.1092289301 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37970 [Jatropha curcas]
4 Hb_047442_010 0.1171550497 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
5 Hb_005394_010 0.1257720689 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
6 Hb_002609_190 0.1262523391 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
7 Hb_001894_160 0.1278779469 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003747_050 0.133340432 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
9 Hb_005941_020 0.1372276171 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
10 Hb_033930_010 0.1386358713 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
11 Hb_000111_390 0.139982142 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
12 Hb_095471_020 0.1403072554 - - -
13 Hb_002965_080 0.1412828794 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
14 Hb_001102_090 0.1425174239 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
15 Hb_003090_150 0.1431086959 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
16 Hb_032202_050 0.1436170685 transcription factor TF Family: TCP conserved hypothetical protein [Ricinus communis]
17 Hb_000803_090 0.1479344699 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]
18 Hb_000317_190 0.1486193272 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
19 Hb_000008_390 0.14901164 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
20 Hb_001294_040 0.1498843941 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]

Gene co-expression network

sample Hb_001776_200 Hb_001776_200 Hb_011671_110 Hb_011671_110 Hb_001776_200--Hb_011671_110 Hb_001414_050 Hb_001414_050 Hb_001776_200--Hb_001414_050 Hb_047442_010 Hb_047442_010 Hb_001776_200--Hb_047442_010 Hb_005394_010 Hb_005394_010 Hb_001776_200--Hb_005394_010 Hb_002609_190 Hb_002609_190 Hb_001776_200--Hb_002609_190 Hb_001894_160 Hb_001894_160 Hb_001776_200--Hb_001894_160 Hb_011671_110--Hb_001894_160 Hb_005941_020 Hb_005941_020 Hb_011671_110--Hb_005941_020 Hb_033930_010 Hb_033930_010 Hb_011671_110--Hb_033930_010 Hb_015026_020 Hb_015026_020 Hb_011671_110--Hb_015026_020 Hb_011671_110--Hb_005394_010 Hb_006935_040 Hb_006935_040 Hb_001414_050--Hb_006935_040 Hb_000008_390 Hb_000008_390 Hb_001414_050--Hb_000008_390 Hb_011671_280 Hb_011671_280 Hb_001414_050--Hb_011671_280 Hb_031821_010 Hb_031821_010 Hb_001414_050--Hb_031821_010 Hb_002965_080 Hb_002965_080 Hb_001414_050--Hb_002965_080 Hb_047442_010--Hb_011671_110 Hb_002965_070 Hb_002965_070 Hb_047442_010--Hb_002965_070 Hb_047442_010--Hb_005394_010 Hb_000317_190 Hb_000317_190 Hb_047442_010--Hb_000317_190 Hb_000111_390 Hb_000111_390 Hb_047442_010--Hb_000111_390 Hb_047442_010--Hb_001894_160 Hb_041895_040 Hb_041895_040 Hb_005394_010--Hb_041895_040 Hb_001246_160 Hb_001246_160 Hb_005394_010--Hb_001246_160 Hb_015026_040 Hb_015026_040 Hb_005394_010--Hb_015026_040 Hb_000163_230 Hb_000163_230 Hb_005394_010--Hb_000163_230 Hb_001133_090 Hb_001133_090 Hb_002609_190--Hb_001133_090 Hb_012305_140 Hb_012305_140 Hb_002609_190--Hb_012305_140 Hb_004800_130 Hb_004800_130 Hb_002609_190--Hb_004800_130 Hb_007031_040 Hb_007031_040 Hb_002609_190--Hb_007031_040 Hb_002259_110 Hb_002259_110 Hb_002609_190--Hb_002259_110 Hb_001205_180 Hb_001205_180 Hb_002609_190--Hb_001205_180 Hb_001894_160--Hb_005941_020 Hb_001894_160--Hb_033930_010 Hb_000928_250 Hb_000928_250 Hb_001894_160--Hb_000928_250 Hb_001894_160--Hb_015026_020 Hb_000622_210 Hb_000622_210 Hb_001894_160--Hb_000622_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.05763 9.17579 12.8774 4.94706 2.78781 1.36557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.83489 0.599669 0.0533618 2.53533 3.3852

CAGE analysis