Hb_000622_210

Information

Type transcription factor
Description TF Family: bZIP
Location Contig622: 175222-180641
Sequence    

Annotation

kegg
ID rcu:RCOM_1617330
description Common plant regulatory factor CPRF-1, putative
nr
ID XP_012083270.1
description PREDICTED: common plant regulatory factor 1-like isoform X3 [Jatropha curcas]
swissprot
ID Q99089
description Common plant regulatory factor 1 OS=Petroselinum crispum GN=CPRF1 PE=2 SV=1
trembl
ID A0A067K8C0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14301 PE=4 SV=1
Gene Ontology
ID GO:0003677
description g-box-binding factor 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51573: 176721-177234 , PASA_asmbl_51574: 175411-180628 , PASA_asmbl_51575: 175411-180628
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000622_210 0.0 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X3 [Jatropha curcas]
2 Hb_001894_160 0.0860360276 - - conserved hypothetical protein [Ricinus communis]
3 Hb_033930_010 0.0980977497 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
4 Hb_161901_020 0.1055329092 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
5 Hb_000928_250 0.1139323499 - - calcium ion binding protein, putative [Ricinus communis]
6 Hb_000318_410 0.1151445845 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
7 Hb_005941_020 0.1164232858 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
8 Hb_011671_110 0.1177504473 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
9 Hb_007224_010 0.1237059731 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
10 Hb_002030_110 0.1304737129 - - PREDICTED: RING-H2 finger protein ATL32-like [Jatropha curcas]
11 Hb_000086_640 0.1311521671 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
12 Hb_000836_580 0.1333792088 - - conserved hypothetical protein [Ricinus communis]
13 Hb_015026_020 0.1350605779 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
14 Hb_000753_140 0.1380806522 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
15 Hb_001519_060 0.1386696209 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
16 Hb_015807_080 0.1407038601 - - PREDICTED: helicase protein MOM1-like [Jatropha curcas]
17 Hb_011930_120 0.1411039755 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
18 Hb_132840_020 0.1481072089 - - PREDICTED: protein LHY [Jatropha curcas]
19 Hb_012787_030 0.1485620385 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
20 Hb_008020_020 0.1500735647 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000622_210 Hb_000622_210 Hb_001894_160 Hb_001894_160 Hb_000622_210--Hb_001894_160 Hb_033930_010 Hb_033930_010 Hb_000622_210--Hb_033930_010 Hb_161901_020 Hb_161901_020 Hb_000622_210--Hb_161901_020 Hb_000928_250 Hb_000928_250 Hb_000622_210--Hb_000928_250 Hb_000318_410 Hb_000318_410 Hb_000622_210--Hb_000318_410 Hb_005941_020 Hb_005941_020 Hb_000622_210--Hb_005941_020 Hb_011671_110 Hb_011671_110 Hb_001894_160--Hb_011671_110 Hb_001894_160--Hb_005941_020 Hb_001894_160--Hb_033930_010 Hb_001894_160--Hb_000928_250 Hb_015026_020 Hb_015026_020 Hb_001894_160--Hb_015026_020 Hb_033930_010--Hb_005941_020 Hb_033930_010--Hb_011671_110 Hb_033930_010--Hb_000318_410 Hb_000086_640 Hb_000086_640 Hb_033930_010--Hb_000086_640 Hb_161901_020--Hb_033930_010 Hb_161901_020--Hb_001894_160 Hb_161901_020--Hb_005941_020 Hb_161901_020--Hb_000086_640 Hb_000421_230 Hb_000421_230 Hb_161901_020--Hb_000421_230 Hb_003106_200 Hb_003106_200 Hb_000928_250--Hb_003106_200 Hb_000928_250--Hb_015026_020 Hb_006935_040 Hb_006935_040 Hb_000928_250--Hb_006935_040 Hb_000928_250--Hb_011671_110 Hb_000753_140 Hb_000753_140 Hb_000318_410--Hb_000753_140 Hb_132840_020 Hb_132840_020 Hb_000318_410--Hb_132840_020 Hb_002639_130 Hb_002639_130 Hb_000318_410--Hb_002639_130 Hb_000318_410--Hb_000086_640 Hb_005941_020--Hb_011671_110 Hb_005941_020--Hb_015026_020 Hb_000317_190 Hb_000317_190 Hb_005941_020--Hb_000317_190 Hb_005941_020--Hb_000086_640
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.91666 44.3507 50.0477 15.3156 2.31916 6.87637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.52415 3.84926 3.08787 3.81748 19.2467

CAGE analysis