Hb_161901_020

Information

Type -
Description -
Location Contig161901: 17694-19019
Sequence    

Annotation

kegg
ID vvi:100263937
description serine/threonine-protein kinase AFC2
nr
ID XP_010663081.1
description PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
swissprot
ID P51567
description Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana GN=AFC2 PE=1 SV=1
trembl
ID I1K059
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase afc2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161901_020 0.0 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
2 Hb_000622_210 0.1055329092 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X3 [Jatropha curcas]
3 Hb_033930_010 0.1069361575 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
4 Hb_001894_160 0.1089527433 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005941_020 0.1095791161 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
6 Hb_000086_640 0.1145182919 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
7 Hb_000421_230 0.1187521755 - - retinal degeneration B beta, putative [Ricinus communis]
8 Hb_090782_010 0.1189004776 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
9 Hb_011671_110 0.1204120103 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
10 Hb_015807_080 0.1234647149 - - PREDICTED: helicase protein MOM1-like [Jatropha curcas]
11 Hb_015026_020 0.1304306529 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
12 Hb_001318_150 0.1311018268 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
13 Hb_000928_250 0.1314411258 - - calcium ion binding protein, putative [Ricinus communis]
14 Hb_001519_060 0.1328004295 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
15 Hb_003581_280 0.1334416555 - - KINASE 2B family protein [Populus trichocarpa]
16 Hb_008020_020 0.1355162582 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Jatropha curcas]
17 Hb_004125_060 0.1369827628 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001898_130 0.1373152456 - - ATP binding protein, putative [Ricinus communis]
19 Hb_002249_170 0.1381095339 - - copine, putative [Ricinus communis]
20 Hb_007224_010 0.1404763229 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]

Gene co-expression network

sample Hb_161901_020 Hb_161901_020 Hb_000622_210 Hb_000622_210 Hb_161901_020--Hb_000622_210 Hb_033930_010 Hb_033930_010 Hb_161901_020--Hb_033930_010 Hb_001894_160 Hb_001894_160 Hb_161901_020--Hb_001894_160 Hb_005941_020 Hb_005941_020 Hb_161901_020--Hb_005941_020 Hb_000086_640 Hb_000086_640 Hb_161901_020--Hb_000086_640 Hb_000421_230 Hb_000421_230 Hb_161901_020--Hb_000421_230 Hb_000622_210--Hb_001894_160 Hb_000622_210--Hb_033930_010 Hb_000928_250 Hb_000928_250 Hb_000622_210--Hb_000928_250 Hb_000318_410 Hb_000318_410 Hb_000622_210--Hb_000318_410 Hb_000622_210--Hb_005941_020 Hb_033930_010--Hb_005941_020 Hb_033930_010--Hb_001894_160 Hb_011671_110 Hb_011671_110 Hb_033930_010--Hb_011671_110 Hb_033930_010--Hb_000318_410 Hb_033930_010--Hb_000086_640 Hb_001894_160--Hb_011671_110 Hb_001894_160--Hb_005941_020 Hb_001894_160--Hb_000928_250 Hb_015026_020 Hb_015026_020 Hb_001894_160--Hb_015026_020 Hb_005941_020--Hb_011671_110 Hb_005941_020--Hb_015026_020 Hb_000317_190 Hb_000317_190 Hb_005941_020--Hb_000317_190 Hb_005941_020--Hb_000086_640 Hb_000035_490 Hb_000035_490 Hb_000086_640--Hb_000035_490 Hb_132840_020 Hb_132840_020 Hb_000086_640--Hb_132840_020 Hb_015807_080 Hb_015807_080 Hb_000086_640--Hb_015807_080 Hb_000753_140 Hb_000753_140 Hb_000086_640--Hb_000753_140 Hb_003581_280 Hb_003581_280 Hb_000421_230--Hb_003581_280 Hb_000045_260 Hb_000045_260 Hb_000421_230--Hb_000045_260 Hb_004125_060 Hb_004125_060 Hb_000421_230--Hb_004125_060 Hb_000638_280 Hb_000638_280 Hb_000421_230--Hb_000638_280 Hb_004108_240 Hb_004108_240 Hb_000421_230--Hb_004108_240 Hb_000925_030 Hb_000925_030 Hb_000421_230--Hb_000925_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.34798 12.6874 14.7857 4.22665 0.980901 0.752662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.64863 2.11444 1.45187 1.86364 4.55724

CAGE analysis