Hb_015026_020

Information

Type transcription factor
Description TF Family: B3
Location Contig15026: 5610-15582
Sequence    

Annotation

kegg
ID rcu:RCOM_1063050
description transcription factor, putative
nr
ID XP_012091508.1
description PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
swissprot
ID Q0D5G4
description B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica GN=Os07g0563300 PE=3 SV=2
trembl
ID A0A067JDQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21364 PE=4 SV=1
Gene Ontology
ID GO:0003677
description b3 domain-containing protein os07g0563300-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12587: 5484-5787 , PASA_asmbl_12588: 6019-6387 , PASA_asmbl_12589: 7374-8969 , PASA_asmbl_12590: 9126-15512 , PASA_asmbl_12591: 13406-13578
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015026_020 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
2 Hb_000928_250 0.0803872661 - - calcium ion binding protein, putative [Ricinus communis]
3 Hb_001894_160 0.0837881559 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011671_110 0.0887350527 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
5 Hb_003106_200 0.0892673878 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
6 Hb_005941_020 0.1040057004 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
7 Hb_000076_100 0.1060321468 - - PREDICTED: septum-promoting GTP-binding protein 1 [Jatropha curcas]
8 Hb_012787_030 0.1120583708 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
9 Hb_029622_030 0.1132015508 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_000212_300 0.1147695636 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
11 Hb_002249_170 0.11626957 - - copine, putative [Ricinus communis]
12 Hb_000317_190 0.1190471109 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
13 Hb_033930_010 0.1205462082 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
14 Hb_006935_040 0.1210590976 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
15 Hb_001021_100 0.1253114125 - - PREDICTED: wee1-like protein kinase [Jatropha curcas]
16 Hb_000818_120 0.1259891111 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001369_030 0.1281554562 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
18 Hb_161901_020 0.1304306529 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
19 Hb_000008_390 0.1320974573 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
20 Hb_005394_010 0.1324026406 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]

Gene co-expression network

sample Hb_015026_020 Hb_015026_020 Hb_000928_250 Hb_000928_250 Hb_015026_020--Hb_000928_250 Hb_001894_160 Hb_001894_160 Hb_015026_020--Hb_001894_160 Hb_011671_110 Hb_011671_110 Hb_015026_020--Hb_011671_110 Hb_003106_200 Hb_003106_200 Hb_015026_020--Hb_003106_200 Hb_005941_020 Hb_005941_020 Hb_015026_020--Hb_005941_020 Hb_000076_100 Hb_000076_100 Hb_015026_020--Hb_000076_100 Hb_000928_250--Hb_003106_200 Hb_000928_250--Hb_001894_160 Hb_006935_040 Hb_006935_040 Hb_000928_250--Hb_006935_040 Hb_000928_250--Hb_011671_110 Hb_000622_210 Hb_000622_210 Hb_000928_250--Hb_000622_210 Hb_001894_160--Hb_011671_110 Hb_001894_160--Hb_005941_020 Hb_033930_010 Hb_033930_010 Hb_001894_160--Hb_033930_010 Hb_001894_160--Hb_000622_210 Hb_011671_110--Hb_005941_020 Hb_011671_110--Hb_033930_010 Hb_001776_200 Hb_001776_200 Hb_011671_110--Hb_001776_200 Hb_005394_010 Hb_005394_010 Hb_011671_110--Hb_005394_010 Hb_000818_120 Hb_000818_120 Hb_003106_200--Hb_000818_120 Hb_002249_170 Hb_002249_170 Hb_003106_200--Hb_002249_170 Hb_000032_200 Hb_000032_200 Hb_003106_200--Hb_000032_200 Hb_001198_080 Hb_001198_080 Hb_003106_200--Hb_001198_080 Hb_005941_020--Hb_033930_010 Hb_000317_190 Hb_000317_190 Hb_005941_020--Hb_000317_190 Hb_000086_640 Hb_000086_640 Hb_005941_020--Hb_000086_640 Hb_124951_010 Hb_124951_010 Hb_000076_100--Hb_124951_010 Hb_010368_080 Hb_010368_080 Hb_000076_100--Hb_010368_080 Hb_000109_130 Hb_000109_130 Hb_000076_100--Hb_000109_130 Hb_000684_100 Hb_000684_100 Hb_000076_100--Hb_000684_100 Hb_000076_100--Hb_000317_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.00813 21.9184 40.3106 11.2699 5.27524 4.74212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.66844 3.16682 4.4081 4.56484 10.9475

CAGE analysis