Hb_000076_100

Information

Type -
Description -
Location Contig76: 71453-74294
Sequence    

Annotation

kegg
ID pop:POPTR_0011s13960g
description POPTRDRAFT_569105; hypothetical protein
nr
ID XP_012070769.1
description PREDICTED: septum-promoting GTP-binding protein 1 [Jatropha curcas]
swissprot
ID P87027
description Septum-promoting GTP-binding protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spg1 PE=1 SV=1
trembl
ID A0A067KSG1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00839 PE=4 SV=1
Gene Ontology
ID GO:0005622
description septum-promoting gtp-binding protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57240: 73071-74273 , PASA_asmbl_57241: 71576-73059 , PASA_asmbl_57242: 71670-74273
cDNA
(Sanger)
(ID:Location)		 002_D17.ab1: 71576-72615

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000076_100 0.0 - - PREDICTED: septum-promoting GTP-binding protein 1 [Jatropha curcas]
2 Hb_015026_020 0.1060321468 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
3 Hb_124951_010 0.111528184 - - chitinase-like protein [Hevea brasiliensis]
4 Hb_010368_080 0.1295633149 - - PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]
5 Hb_000109_130 0.1301635806 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9 [Jatropha curcas]
6 Hb_000684_100 0.1318450451 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
7 Hb_000317_190 0.1352400829 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
8 Hb_005394_010 0.140878343 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
9 Hb_000185_230 0.1420676297 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_011671_110 0.1447243287 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
11 Hb_000058_050 0.1448948681 - - PREDICTED: uncharacterized protein LOC105640877 [Jatropha curcas]
12 Hb_004837_220 0.1530728292 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
13 Hb_002600_130 0.1547989902 - - PREDICTED: uncharacterized protein LOC105646808 [Jatropha curcas]
14 Hb_000152_760 0.1552963542 - - conserved hypothetical protein [Ricinus communis]
15 Hb_047442_010 0.1566612115 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
16 Hb_001214_190 0.1566847509 - - hypothetical protein JCGZ_25001 [Jatropha curcas]
17 Hb_163968_010 0.1574972562 - - vesicle-associated membrane protein, putative [Ricinus communis]
18 Hb_029622_030 0.1578866436 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_000008_390 0.1621925267 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
20 Hb_000212_300 0.1628843017 - - PREDICTED: thaumatin-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000076_100 Hb_000076_100 Hb_015026_020 Hb_015026_020 Hb_000076_100--Hb_015026_020 Hb_124951_010 Hb_124951_010 Hb_000076_100--Hb_124951_010 Hb_010368_080 Hb_010368_080 Hb_000076_100--Hb_010368_080 Hb_000109_130 Hb_000109_130 Hb_000076_100--Hb_000109_130 Hb_000684_100 Hb_000684_100 Hb_000076_100--Hb_000684_100 Hb_000317_190 Hb_000317_190 Hb_000076_100--Hb_000317_190 Hb_000928_250 Hb_000928_250 Hb_015026_020--Hb_000928_250 Hb_001894_160 Hb_001894_160 Hb_015026_020--Hb_001894_160 Hb_011671_110 Hb_011671_110 Hb_015026_020--Hb_011671_110 Hb_003106_200 Hb_003106_200 Hb_015026_020--Hb_003106_200 Hb_005941_020 Hb_005941_020 Hb_015026_020--Hb_005941_020 Hb_002600_130 Hb_002600_130 Hb_124951_010--Hb_002600_130 Hb_124951_010--Hb_000317_190 Hb_163968_010 Hb_163968_010 Hb_124951_010--Hb_163968_010 Hb_001214_190 Hb_001214_190 Hb_124951_010--Hb_001214_190 Hb_000134_030 Hb_000134_030 Hb_124951_010--Hb_000134_030 Hb_012305_140 Hb_012305_140 Hb_010368_080--Hb_012305_140 Hb_001369_030 Hb_001369_030 Hb_010368_080--Hb_001369_030 Hb_004267_060 Hb_004267_060 Hb_010368_080--Hb_004267_060 Hb_004526_010 Hb_004526_010 Hb_010368_080--Hb_004526_010 Hb_000796_120 Hb_000796_120 Hb_010368_080--Hb_000796_120 Hb_004837_220 Hb_004837_220 Hb_010368_080--Hb_004837_220 Hb_005488_120 Hb_005488_120 Hb_000109_130--Hb_005488_120 Hb_001246_160 Hb_001246_160 Hb_000109_130--Hb_001246_160 Hb_006545_020 Hb_006545_020 Hb_000109_130--Hb_006545_020 Hb_004586_130 Hb_004586_130 Hb_000109_130--Hb_004586_130 Hb_000109_130--Hb_010368_080 Hb_000979_060 Hb_000979_060 Hb_000684_100--Hb_000979_060 Hb_004125_060 Hb_004125_060 Hb_000684_100--Hb_004125_060 Hb_000009_220 Hb_000009_220 Hb_000684_100--Hb_000009_220 Hb_000684_100--Hb_001369_030 Hb_000086_430 Hb_000086_430 Hb_000684_100--Hb_000086_430 Hb_000062_360 Hb_000062_360 Hb_000684_100--Hb_000062_360 Hb_000317_190--Hb_005941_020 Hb_047442_010 Hb_047442_010 Hb_000317_190--Hb_047442_010 Hb_000317_190--Hb_001894_160 Hb_000317_190--Hb_011671_110 Hb_000317_190--Hb_015026_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.76503 33.5164 62.5878 13.737 11.3754 6.97582
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.31536 6.36935 6.67936 9.40468 7.89238

CAGE analysis