Hb_004586_130

Information

Type -
Description -
Location Contig4586: 135030-152417
Sequence    

Annotation

kegg
ID rcu:RCOM_1039150
description hypothetical protein
nr
ID XP_002514022.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4JQZ3
description Rho GTPase-activating protein REN1 OS=Arabidopsis thaliana GN=REN1 PE=1 SV=2
trembl
ID B9RJV3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1039150 PE=4 SV=1
Gene Ontology
ID GO:0044763
description rho gtpase-activating protein ren1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43521: 137233-138099 , PASA_asmbl_43522: 138187-152310
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000283_100 0.0926720881 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
3 Hb_002151_130 0.098387358 - - 12-oxophytodienoate reductase [Hevea brasiliensis]
4 Hb_010126_030 0.0999591756 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
5 Hb_000221_230 0.1048010142 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
6 Hb_002876_070 0.1148872976 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
7 Hb_001989_060 0.1165587383 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
8 Hb_000680_180 0.127833857 - - hypothetical protein JCGZ_15248 [Jatropha curcas]
9 Hb_008020_020 0.1282338917 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like isoform X1 [Jatropha curcas]
10 Hb_000451_040 0.1298977095 - - conserved hypothetical protein [Ricinus communis]
11 Hb_061908_030 0.131046648 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
12 Hb_000805_040 0.1327854186 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
13 Hb_124677_020 0.1340258986 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
14 Hb_011930_120 0.134026915 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
15 Hb_002311_150 0.1363279618 - - Protein COBRA precursor, putative [Ricinus communis]
16 Hb_001059_090 0.1364795157 - - PREDICTED: F-box protein At1g61340 [Jatropha curcas]
17 Hb_001246_160 0.142577657 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
18 Hb_000045_140 0.143217366 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
19 Hb_000984_290 0.1439469669 - - PREDICTED: putative lipase ROG1 isoform X2 [Jatropha curcas]
20 Hb_015026_040 0.1462559673 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]

Gene co-expression network

sample Hb_004586_130 Hb_004586_130 Hb_000283_100 Hb_000283_100 Hb_004586_130--Hb_000283_100 Hb_002151_130 Hb_002151_130 Hb_004586_130--Hb_002151_130 Hb_010126_030 Hb_010126_030 Hb_004586_130--Hb_010126_030 Hb_000221_230 Hb_000221_230 Hb_004586_130--Hb_000221_230 Hb_002876_070 Hb_002876_070 Hb_004586_130--Hb_002876_070 Hb_001989_060 Hb_001989_060 Hb_004586_130--Hb_001989_060 Hb_000283_100--Hb_010126_030 Hb_000283_100--Hb_001989_060 Hb_000045_140 Hb_000045_140 Hb_000283_100--Hb_000045_140 Hb_000680_180 Hb_000680_180 Hb_000283_100--Hb_000680_180 Hb_000336_060 Hb_000336_060 Hb_000283_100--Hb_000336_060 Hb_124677_020 Hb_124677_020 Hb_002151_130--Hb_124677_020 Hb_000984_290 Hb_000984_290 Hb_002151_130--Hb_000984_290 Hb_061908_030 Hb_061908_030 Hb_002151_130--Hb_061908_030 Hb_002151_130--Hb_010126_030 Hb_002151_130--Hb_002876_070 Hb_010126_030--Hb_001989_060 Hb_010126_030--Hb_061908_030 Hb_010126_030--Hb_000680_180 Hb_001999_170 Hb_001999_170 Hb_010126_030--Hb_001999_170 Hb_015026_040 Hb_015026_040 Hb_000221_230--Hb_015026_040 Hb_008020_020 Hb_008020_020 Hb_000221_230--Hb_008020_020 Hb_005394_010 Hb_005394_010 Hb_000221_230--Hb_005394_010 Hb_000221_230--Hb_000680_180 Hb_041895_040 Hb_041895_040 Hb_000221_230--Hb_041895_040 Hb_003207_100 Hb_003207_100 Hb_002876_070--Hb_003207_100 Hb_000272_110 Hb_000272_110 Hb_002876_070--Hb_000272_110 Hb_011930_120 Hb_011930_120 Hb_002876_070--Hb_011930_120 Hb_002876_070--Hb_008020_020 Hb_001246_160 Hb_001246_160 Hb_002876_070--Hb_001246_160 Hb_007120_010 Hb_007120_010 Hb_001989_060--Hb_007120_010 Hb_001989_060--Hb_011930_120 Hb_001989_060--Hb_000680_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.4257 52.7345 39.3557 14.7994 3.74458 2.32236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.51788 2.84134 2.70749 3.44414 2.60054

CAGE analysis