Hb_000680_180

Information

Type -
Description -
Location Contig680: 206383-207672
Sequence    

Annotation

kegg
ID bvg:104900936
description uncharacterized LOC104900936
nr
ID KDP30539.1
description hypothetical protein JCGZ_15248 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KFB2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15248 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53767: 206326-208677 , PASA_asmbl_53768: 208323-208677
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000680_180 0.0 - - hypothetical protein JCGZ_15248 [Jatropha curcas]
2 Hb_011930_120 0.1001363324 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
3 Hb_010126_030 0.1009918911 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
4 Hb_002007_070 0.1048737824 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
5 Hb_000283_100 0.1186650112 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
6 Hb_001989_060 0.1197725412 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
7 Hb_001579_070 0.123629718 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
8 Hb_000959_020 0.1267008102 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
9 Hb_004586_130 0.127833857 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002498_250 0.129911367 - - 5'-adenylylsulfate reductase 1, chloroplast precursor, putative [Ricinus communis]
11 Hb_000221_230 0.1363574108 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
12 Hb_000086_620 0.1371209327 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
13 Hb_002030_110 0.1434453492 - - PREDICTED: RING-H2 finger protein ATL32-like [Jatropha curcas]
14 Hb_002311_150 0.1445947628 - - Protein COBRA precursor, putative [Ricinus communis]
15 Hb_061908_030 0.1454097025 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
16 Hb_000003_240 0.1458719698 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000162_130 0.1463346515 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000984_290 0.1505855452 - - PREDICTED: putative lipase ROG1 isoform X2 [Jatropha curcas]
19 Hb_001519_060 0.1524251353 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
20 Hb_002960_100 0.1529088675 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]

Gene co-expression network

sample Hb_000680_180 Hb_000680_180 Hb_011930_120 Hb_011930_120 Hb_000680_180--Hb_011930_120 Hb_010126_030 Hb_010126_030 Hb_000680_180--Hb_010126_030 Hb_002007_070 Hb_002007_070 Hb_000680_180--Hb_002007_070 Hb_000283_100 Hb_000283_100 Hb_000680_180--Hb_000283_100 Hb_001989_060 Hb_001989_060 Hb_000680_180--Hb_001989_060 Hb_001579_070 Hb_001579_070 Hb_000680_180--Hb_001579_070 Hb_011930_120--Hb_001579_070 Hb_000086_620 Hb_000086_620 Hb_011930_120--Hb_000086_620 Hb_011930_120--Hb_001989_060 Hb_000805_040 Hb_000805_040 Hb_011930_120--Hb_000805_040 Hb_002498_250 Hb_002498_250 Hb_011930_120--Hb_002498_250 Hb_010126_030--Hb_000283_100 Hb_010126_030--Hb_001989_060 Hb_004586_130 Hb_004586_130 Hb_010126_030--Hb_004586_130 Hb_061908_030 Hb_061908_030 Hb_010126_030--Hb_061908_030 Hb_001999_170 Hb_001999_170 Hb_010126_030--Hb_001999_170 Hb_000162_130 Hb_000162_130 Hb_002007_070--Hb_000162_130 Hb_002007_070--Hb_010126_030 Hb_000256_180 Hb_000256_180 Hb_002007_070--Hb_000256_180 Hb_004612_020 Hb_004612_020 Hb_002007_070--Hb_004612_020 Hb_000984_290 Hb_000984_290 Hb_002007_070--Hb_000984_290 Hb_000283_100--Hb_001989_060 Hb_000283_100--Hb_004586_130 Hb_000045_140 Hb_000045_140 Hb_000283_100--Hb_000045_140 Hb_000336_060 Hb_000336_060 Hb_000283_100--Hb_000336_060 Hb_007120_010 Hb_007120_010 Hb_001989_060--Hb_007120_010 Hb_001989_060--Hb_004586_130 Hb_000003_240 Hb_000003_240 Hb_001579_070--Hb_000003_240 Hb_155946_030 Hb_155946_030 Hb_001579_070--Hb_155946_030 Hb_001519_060 Hb_001519_060 Hb_001579_070--Hb_001519_060 Hb_031108_010 Hb_031108_010 Hb_001579_070--Hb_031108_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.64723 50.7884 46.8827 17.414 1.89043 3.2238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.78702 2.37223 3.49915 0.925642 7.90981

CAGE analysis