Hb_002007_070

Information

Type -
Description -
Location Contig2007: 28392-29315
Sequence    

Annotation

kegg
ID rcu:RCOM_1432940
description hypothetical protein
nr
ID XP_012089026.1
description PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JHR5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23324 PE=4 SV=1
Gene Ontology
ID GO:0005515
description c2 domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20364: 28271-29531
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002007_070 0.0 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
2 Hb_000680_180 0.1048737824 - - hypothetical protein JCGZ_15248 [Jatropha curcas]
3 Hb_000162_130 0.1139388294 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010126_030 0.1155788362 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
5 Hb_000256_180 0.1343666635 - - PREDICTED: uncharacterized protein LOC105637589 [Jatropha curcas]
6 Hb_004612_020 0.1350343153 - - PREDICTED: tetraspanin-8-like [Populus euphratica]
7 Hb_000984_290 0.1360554242 - - PREDICTED: putative lipase ROG1 isoform X2 [Jatropha curcas]
8 Hb_155946_030 0.1409827595 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
9 Hb_001579_070 0.1439266834 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
10 Hb_124677_020 0.1441785238 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
11 Hb_001999_170 0.145096666 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
12 Hb_002151_130 0.1459200034 - - 12-oxophytodienoate reductase [Hevea brasiliensis]
13 Hb_004586_130 0.1483264239 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002133_010 0.15079346 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
15 Hb_000283_100 0.1520827046 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
16 Hb_000336_060 0.1522962041 - - hypothetical protein JCGZ_26632 [Jatropha curcas]
17 Hb_007894_020 0.1548501384 - - protein translation factor SUI1 homolog 2 [Jatropha curcas]
18 Hb_000172_410 0.1549981624 - - metal ion binding protein, putative [Ricinus communis]
19 Hb_000959_020 0.1562129283 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
20 Hb_002311_150 0.1567012478 - - Protein COBRA precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002007_070 Hb_002007_070 Hb_000680_180 Hb_000680_180 Hb_002007_070--Hb_000680_180 Hb_000162_130 Hb_000162_130 Hb_002007_070--Hb_000162_130 Hb_010126_030 Hb_010126_030 Hb_002007_070--Hb_010126_030 Hb_000256_180 Hb_000256_180 Hb_002007_070--Hb_000256_180 Hb_004612_020 Hb_004612_020 Hb_002007_070--Hb_004612_020 Hb_000984_290 Hb_000984_290 Hb_002007_070--Hb_000984_290 Hb_011930_120 Hb_011930_120 Hb_000680_180--Hb_011930_120 Hb_000680_180--Hb_010126_030 Hb_000283_100 Hb_000283_100 Hb_000680_180--Hb_000283_100 Hb_001989_060 Hb_001989_060 Hb_000680_180--Hb_001989_060 Hb_001579_070 Hb_001579_070 Hb_000680_180--Hb_001579_070 Hb_155946_030 Hb_155946_030 Hb_000162_130--Hb_155946_030 Hb_000162_130--Hb_001579_070 Hb_000959_020 Hb_000959_020 Hb_000162_130--Hb_000959_020 Hb_000162_130--Hb_000680_180 Hb_000003_240 Hb_000003_240 Hb_000162_130--Hb_000003_240 Hb_010126_030--Hb_000283_100 Hb_010126_030--Hb_001989_060 Hb_004586_130 Hb_004586_130 Hb_010126_030--Hb_004586_130 Hb_061908_030 Hb_061908_030 Hb_010126_030--Hb_061908_030 Hb_001999_170 Hb_001999_170 Hb_010126_030--Hb_001999_170 Hb_009252_090 Hb_009252_090 Hb_000256_180--Hb_009252_090 Hb_000256_180--Hb_004612_020 Hb_000592_070 Hb_000592_070 Hb_000256_180--Hb_000592_070 Hb_002133_010 Hb_002133_010 Hb_000256_180--Hb_002133_010 Hb_001660_080 Hb_001660_080 Hb_000256_180--Hb_001660_080 Hb_004899_010 Hb_004899_010 Hb_004612_020--Hb_004899_010 Hb_000164_160 Hb_000164_160 Hb_004612_020--Hb_000164_160 Hb_001310_010 Hb_001310_010 Hb_004612_020--Hb_001310_010 Hb_005381_010 Hb_005381_010 Hb_004612_020--Hb_005381_010 Hb_000069_530 Hb_000069_530 Hb_004612_020--Hb_000069_530 Hb_000627_130 Hb_000627_130 Hb_004612_020--Hb_000627_130 Hb_000451_040 Hb_000451_040 Hb_000984_290--Hb_000451_040 Hb_002151_130 Hb_002151_130 Hb_000984_290--Hb_002151_130 Hb_000984_290--Hb_061908_030 Hb_000172_410 Hb_000172_410 Hb_000984_290--Hb_000172_410 Hb_003078_070 Hb_003078_070 Hb_000984_290--Hb_003078_070 Hb_124677_020 Hb_124677_020 Hb_000984_290--Hb_124677_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.8978 609.8 665.035 264.237 18.3843 21.243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.2929 22.4062 16.9217 6.11984 46.1002

CAGE analysis