Hb_000959_020

Information

Type -
Description -
Location Contig959: 6552-8045
Sequence    

Annotation

kegg
ID rcu:RCOM_0075500
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_002530257.1
description Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
swissprot
ID Q6NKW9
description Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2
trembl
ID B9SW88
description Glucan endo-1,3-beta-glucosidase, putative OS=Ricinus communis GN=RCOM_0075500 PE=3 SV=1
Gene Ontology
ID GO:0042973
description glucan endo- -beta-glucosidase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63622: 7271-7835
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_020 0.0 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
2 Hb_000680_180 0.1267008102 - - hypothetical protein JCGZ_15248 [Jatropha curcas]
3 Hb_001519_060 0.1306206554 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
4 Hb_000162_130 0.1431189339 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001579_070 0.1538284993 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
6 Hb_002007_070 0.1562129283 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
7 Hb_015026_040 0.1567142944 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
8 Hb_002030_110 0.1623575124 - - PREDICTED: RING-H2 finger protein ATL32-like [Jatropha curcas]
9 Hb_011930_120 0.1635499818 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
10 Hb_000003_240 0.1680975892 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002498_250 0.172503231 - - 5'-adenylylsulfate reductase 1, chloroplast precursor, putative [Ricinus communis]
12 Hb_000221_230 0.1767066432 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
13 Hb_002311_150 0.1782520763 - - Protein COBRA precursor, putative [Ricinus communis]
14 Hb_094437_050 0.1793193011 - - PREDICTED: uncharacterized protein LOC105630877 isoform X2 [Jatropha curcas]
15 Hb_012787_030 0.1840716954 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
16 Hb_000622_210 0.1848228728 transcription factor TF Family: bZIP PREDICTED: common plant regulatory factor 1-like isoform X3 [Jatropha curcas]
17 Hb_021409_110 0.1884580272 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_002217_190 0.1902006662 - - invertase [Hevea brasiliensis]
19 Hb_000445_100 0.1904782138 - - PREDICTED: glutathione S-transferase TCHQD [Jatropha curcas]
20 Hb_000009_200 0.1913195155 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]

Gene co-expression network

sample Hb_000959_020 Hb_000959_020 Hb_000680_180 Hb_000680_180 Hb_000959_020--Hb_000680_180 Hb_001519_060 Hb_001519_060 Hb_000959_020--Hb_001519_060 Hb_000162_130 Hb_000162_130 Hb_000959_020--Hb_000162_130 Hb_001579_070 Hb_001579_070 Hb_000959_020--Hb_001579_070 Hb_002007_070 Hb_002007_070 Hb_000959_020--Hb_002007_070 Hb_015026_040 Hb_015026_040 Hb_000959_020--Hb_015026_040 Hb_011930_120 Hb_011930_120 Hb_000680_180--Hb_011930_120 Hb_010126_030 Hb_010126_030 Hb_000680_180--Hb_010126_030 Hb_000680_180--Hb_002007_070 Hb_000283_100 Hb_000283_100 Hb_000680_180--Hb_000283_100 Hb_001989_060 Hb_001989_060 Hb_000680_180--Hb_001989_060 Hb_000680_180--Hb_001579_070 Hb_007224_010 Hb_007224_010 Hb_001519_060--Hb_007224_010 Hb_001627_010 Hb_001627_010 Hb_001519_060--Hb_001627_010 Hb_002965_080 Hb_002965_080 Hb_001519_060--Hb_002965_080 Hb_001396_120 Hb_001396_120 Hb_001519_060--Hb_001396_120 Hb_001519_060--Hb_001579_070 Hb_002217_190 Hb_002217_190 Hb_001519_060--Hb_002217_190 Hb_000162_130--Hb_002007_070 Hb_155946_030 Hb_155946_030 Hb_000162_130--Hb_155946_030 Hb_000162_130--Hb_001579_070 Hb_000162_130--Hb_000680_180 Hb_000003_240 Hb_000003_240 Hb_000162_130--Hb_000003_240 Hb_001579_070--Hb_011930_120 Hb_001579_070--Hb_000003_240 Hb_001579_070--Hb_155946_030 Hb_031108_010 Hb_031108_010 Hb_001579_070--Hb_031108_010 Hb_002007_070--Hb_010126_030 Hb_000256_180 Hb_000256_180 Hb_002007_070--Hb_000256_180 Hb_004612_020 Hb_004612_020 Hb_002007_070--Hb_004612_020 Hb_000984_290 Hb_000984_290 Hb_002007_070--Hb_000984_290 Hb_000221_230 Hb_000221_230 Hb_015026_040--Hb_000221_230 Hb_041895_040 Hb_041895_040 Hb_015026_040--Hb_041895_040 Hb_005394_010 Hb_005394_010 Hb_015026_040--Hb_005394_010 Hb_000445_100 Hb_000445_100 Hb_015026_040--Hb_000445_100 Hb_090782_010 Hb_090782_010 Hb_015026_040--Hb_090782_010 Hb_008020_020 Hb_008020_020 Hb_015026_040--Hb_008020_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0538586 0.535315 0.652344 0.374042 0.0289146 0.0721735
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0352005 0.055383 0.0518073 0 0.115331

CAGE analysis