Hb_010126_030

Information

Type transcription factor
Description TF Family: NAC
Location Contig10126: 25961-28640
Sequence    

Annotation

kegg
ID rcu:RCOM_0757170
description transcription factor, putative
nr
ID XP_012072818.1
description PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
swissprot
ID Q9SCK6
description NAC domain-containing protein 62 OS=Arabidopsis thaliana GN=NAC062 PE=1 SV=1
trembl
ID R4NHR7
description NAC transcription factor 054 OS=Jatropha curcas GN=JCGZ_08268 PE=4 SV=1
Gene Ontology
ID GO:0003677
description nac domain class transcription isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00635: 26064-28572
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010126_030 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
2 Hb_000283_100 0.0619119985 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
3 Hb_001989_060 0.0908040653 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105634562 isoform X2 [Jatropha curcas]
4 Hb_004586_130 0.0999591756 - - conserved hypothetical protein [Ricinus communis]
5 Hb_061908_030 0.1005497664 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
6 Hb_000680_180 0.1009918911 - - hypothetical protein JCGZ_15248 [Jatropha curcas]
7 Hb_001999_170 0.1072608307 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
8 Hb_002960_100 0.1112714864 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
9 Hb_000336_060 0.1146337481 - - hypothetical protein JCGZ_26632 [Jatropha curcas]
10 Hb_002007_070 0.1155788362 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
11 Hb_000045_140 0.123713852 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
12 Hb_124677_020 0.1256387972 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
13 Hb_011930_120 0.1273970103 - - PREDICTED: uncharacterized protein LOC105649794 isoform X1 [Jatropha curcas]
14 Hb_000451_040 0.1286502247 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000984_290 0.134378595 - - PREDICTED: putative lipase ROG1 isoform X2 [Jatropha curcas]
16 Hb_001310_010 0.1347567207 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type [Jatropha curcas]
17 Hb_000086_620 0.1355037534 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
18 Hb_002151_130 0.1384365248 - - 12-oxophytodienoate reductase [Hevea brasiliensis]
19 Hb_000221_230 0.1493678202 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
20 Hb_007120_010 0.1579220523 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]

Gene co-expression network

sample Hb_010126_030 Hb_010126_030 Hb_000283_100 Hb_000283_100 Hb_010126_030--Hb_000283_100 Hb_001989_060 Hb_001989_060 Hb_010126_030--Hb_001989_060 Hb_004586_130 Hb_004586_130 Hb_010126_030--Hb_004586_130 Hb_061908_030 Hb_061908_030 Hb_010126_030--Hb_061908_030 Hb_000680_180 Hb_000680_180 Hb_010126_030--Hb_000680_180 Hb_001999_170 Hb_001999_170 Hb_010126_030--Hb_001999_170 Hb_000283_100--Hb_001989_060 Hb_000283_100--Hb_004586_130 Hb_000045_140 Hb_000045_140 Hb_000283_100--Hb_000045_140 Hb_000283_100--Hb_000680_180 Hb_000336_060 Hb_000336_060 Hb_000283_100--Hb_000336_060 Hb_007120_010 Hb_007120_010 Hb_001989_060--Hb_007120_010 Hb_011930_120 Hb_011930_120 Hb_001989_060--Hb_011930_120 Hb_001989_060--Hb_004586_130 Hb_001989_060--Hb_000680_180 Hb_002151_130 Hb_002151_130 Hb_004586_130--Hb_002151_130 Hb_000221_230 Hb_000221_230 Hb_004586_130--Hb_000221_230 Hb_002876_070 Hb_002876_070 Hb_004586_130--Hb_002876_070 Hb_061908_030--Hb_002151_130 Hb_000451_040 Hb_000451_040 Hb_061908_030--Hb_000451_040 Hb_000984_290 Hb_000984_290 Hb_061908_030--Hb_000984_290 Hb_061908_030--Hb_004586_130 Hb_002960_100 Hb_002960_100 Hb_061908_030--Hb_002960_100 Hb_000680_180--Hb_011930_120 Hb_002007_070 Hb_002007_070 Hb_000680_180--Hb_002007_070 Hb_001579_070 Hb_001579_070 Hb_000680_180--Hb_001579_070 Hb_001310_010 Hb_001310_010 Hb_001999_170--Hb_001310_010 Hb_010964_010 Hb_010964_010 Hb_001999_170--Hb_010964_010 Hb_001999_170--Hb_000336_060 Hb_005054_330 Hb_005054_330 Hb_001999_170--Hb_005054_330 Hb_007858_020 Hb_007858_020 Hb_001999_170--Hb_007858_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.67121 211.583 149.017 45.4419 7.98313 5.75222
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.41309 7.24377 5.56928 4.33646 16.1304

CAGE analysis