Hb_007858_020

Information

Type -
Description -
Location Contig7858: 24099-32284
Sequence    

Annotation

kegg
ID rcu:RCOM_1359910
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012079110.1
description PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
swissprot
ID O80871
description Probable protein phosphatase 2C 25 OS=Arabidopsis thaliana GN=At2g30020 PE=1 SV=1
trembl
ID A0A067LMZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17396 PE=3 SV=1
Gene Ontology
ID GO:0009536
description probable protein phosphatase 2c 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58102: 30462-32372
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007858_020 0.0 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
2 Hb_005054_330 0.0476012918 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
3 Hb_004032_220 0.0666523828 - - Calmodulin, putative [Ricinus communis]
4 Hb_124953_010 0.0747641244 - - hypothetical protein RCOM_1314600 [Ricinus communis]
5 Hb_000959_240 0.074809368 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
6 Hb_000032_150 0.0752209578 transcription factor TF Family: WRKY hypothetical protein RCOM_1691430 [Ricinus communis]
7 Hb_167186_010 0.0754504735 - - cation-transporting atpase plant, putative [Ricinus communis]
8 Hb_000627_130 0.0806046619 - - Polcalcin Jun o, putative [Ricinus communis]
9 Hb_003207_230 0.0823355575 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
10 Hb_008725_220 0.0895425011 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
11 Hb_001619_140 0.0978575537 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
12 Hb_001257_040 0.0991735886 - - PREDICTED: uncharacterized protein LOC105640055 [Jatropha curcas]
13 Hb_000571_030 0.0992884476 - - ammonium transporter, putative [Ricinus communis]
14 Hb_000836_310 0.1048617842 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 30 [Jatropha curcas]
15 Hb_047955_010 0.1049914179 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
16 Hb_010964_010 0.1055737279 - - -
17 Hb_000340_060 0.1060892146 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001153_250 0.1077308222 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
19 Hb_000164_160 0.1111961591 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
20 Hb_000808_090 0.1133777235 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]

Gene co-expression network

sample Hb_007858_020 Hb_007858_020 Hb_005054_330 Hb_005054_330 Hb_007858_020--Hb_005054_330 Hb_004032_220 Hb_004032_220 Hb_007858_020--Hb_004032_220 Hb_124953_010 Hb_124953_010 Hb_007858_020--Hb_124953_010 Hb_000959_240 Hb_000959_240 Hb_007858_020--Hb_000959_240 Hb_000032_150 Hb_000032_150 Hb_007858_020--Hb_000032_150 Hb_167186_010 Hb_167186_010 Hb_007858_020--Hb_167186_010 Hb_005054_330--Hb_167186_010 Hb_005054_330--Hb_000959_240 Hb_008725_220 Hb_008725_220 Hb_005054_330--Hb_008725_220 Hb_000164_160 Hb_000164_160 Hb_005054_330--Hb_000164_160 Hb_003207_230 Hb_003207_230 Hb_005054_330--Hb_003207_230 Hb_004032_220--Hb_000032_150 Hb_000836_310 Hb_000836_310 Hb_004032_220--Hb_000836_310 Hb_004032_220--Hb_124953_010 Hb_001257_040 Hb_001257_040 Hb_004032_220--Hb_001257_040 Hb_004032_220--Hb_005054_330 Hb_124953_010--Hb_003207_230 Hb_124953_010--Hb_000032_150 Hb_124953_010--Hb_005054_330 Hb_047955_010 Hb_047955_010 Hb_124953_010--Hb_047955_010 Hb_000959_240--Hb_008725_220 Hb_000959_240--Hb_167186_010 Hb_101437_010 Hb_101437_010 Hb_000959_240--Hb_101437_010 Hb_000025_490 Hb_000025_490 Hb_000959_240--Hb_000025_490 Hb_000032_150--Hb_047955_010 Hb_000032_150--Hb_001257_040 Hb_000032_150--Hb_003207_230 Hb_167186_010--Hb_008725_220 Hb_167186_010--Hb_000025_490 Hb_002119_030 Hb_002119_030 Hb_167186_010--Hb_002119_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.799358 621.864 346.921 104.289 0.480952 0.677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.718345 1.98735 0.829254 4.73052 21.7552

CAGE analysis