Hb_002119_030

Information

Type -
Description -
Location Contig2119: 37420-38748
Sequence    

Annotation

kegg
ID rcu:RCOM_1149010
description Spotted leaf protein, putative
nr
ID XP_012072358.1
description PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
swissprot
ID Q5PNY6
description U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1
trembl
ID A0A067L249
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04802 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 21-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002119_030 0.0 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
2 Hb_000025_490 0.0807833561 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
3 Hb_067028_010 0.0911980169 - - BnaC03g72040D [Brassica napus]
4 Hb_167186_010 0.0933447373 - - cation-transporting atpase plant, putative [Ricinus communis]
5 Hb_008725_220 0.118871475 - - PREDICTED: uncharacterized protein LOC105642593 [Jatropha curcas]
6 Hb_000959_240 0.1229082318 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
7 Hb_005054_330 0.1257712426 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
8 Hb_171974_010 0.1306325186 - - aldo-keto reductase, putative [Ricinus communis]
9 Hb_001405_250 0.1336001238 - - PREDICTED: uncharacterized protein LOC105645451 [Jatropha curcas]
10 Hb_001515_040 0.1400203094 - - -
11 Hb_002542_030 0.1424432484 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
12 Hb_000302_150 0.1429700722 transcription factor TF Family: WRKY hypothetical protein RCOM_1581940 [Ricinus communis]
13 Hb_007858_020 0.1464466066 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
14 Hb_032071_010 0.1464673392 - - hypothetical protein EUGRSUZ_J02969 [Eucalyptus grandis]
15 Hb_179363_010 0.146902558 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
16 Hb_000540_090 0.1475352122 - - PREDICTED: chitinase 2-like [Jatropha curcas]
17 Hb_000164_160 0.1515583718 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
18 Hb_112703_010 0.1525688237 - - PREDICTED: cytochrome P450 CYP72A219-like [Prunus mume]
19 Hb_001922_100 0.1540755042 - - S-type anion channel SLAH2 [Triticum urartu]
20 Hb_101437_010 0.1566037375 - - PREDICTED: protein P21-like [Jatropha curcas]

Gene co-expression network

sample Hb_002119_030 Hb_002119_030 Hb_000025_490 Hb_000025_490 Hb_002119_030--Hb_000025_490 Hb_067028_010 Hb_067028_010 Hb_002119_030--Hb_067028_010 Hb_167186_010 Hb_167186_010 Hb_002119_030--Hb_167186_010 Hb_008725_220 Hb_008725_220 Hb_002119_030--Hb_008725_220 Hb_000959_240 Hb_000959_240 Hb_002119_030--Hb_000959_240 Hb_005054_330 Hb_005054_330 Hb_002119_030--Hb_005054_330 Hb_000025_490--Hb_008725_220 Hb_000025_490--Hb_000959_240 Hb_001515_040 Hb_001515_040 Hb_000025_490--Hb_001515_040 Hb_000025_490--Hb_167186_010 Hb_101437_010 Hb_101437_010 Hb_000025_490--Hb_101437_010 Hb_000302_150 Hb_000302_150 Hb_067028_010--Hb_000302_150 Hb_001922_100 Hb_001922_100 Hb_067028_010--Hb_001922_100 Hb_006395_020 Hb_006395_020 Hb_067028_010--Hb_006395_020 Hb_067028_010--Hb_167186_010 Hb_001405_250 Hb_001405_250 Hb_067028_010--Hb_001405_250 Hb_167186_010--Hb_005054_330 Hb_007858_020 Hb_007858_020 Hb_167186_010--Hb_007858_020 Hb_167186_010--Hb_008725_220 Hb_167186_010--Hb_000959_240 Hb_008725_220--Hb_000959_240 Hb_008725_220--Hb_005054_330 Hb_008725_220--Hb_101437_010 Hb_008725_220--Hb_001515_040 Hb_000959_240--Hb_007858_020 Hb_000959_240--Hb_005054_330 Hb_000959_240--Hb_101437_010 Hb_005054_330--Hb_007858_020 Hb_000164_160 Hb_000164_160 Hb_005054_330--Hb_000164_160 Hb_003207_230 Hb_003207_230 Hb_005054_330--Hb_003207_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 40.5971 28.5417 4.74374 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.49875 0.15859 0.893328 0.0588366

CAGE analysis