Hb_001922_100

Information

Type -
Description -
Location Contig1922: 102602-105107
Sequence    

Annotation

kegg
ID sbi:SORBI_03g001113
description SORBIDRAFT_03g001113, Sb03g001113; hypothetical protein
nr
ID EMS50810.1
description S-type anion channel SLAH2 [Triticum urartu]
swissprot
ID -
description -
trembl
ID M0THG3
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0044237
description s-type anion channel slah2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001922_100 0.0 - - S-type anion channel SLAH2 [Triticum urartu]
2 Hb_000302_150 0.048210123 transcription factor TF Family: WRKY hypothetical protein RCOM_1581940 [Ricinus communis]
3 Hb_067028_010 0.1076986973 - - BnaC03g72040D [Brassica napus]
4 Hb_018043_010 0.1281568753 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
5 Hb_006395_020 0.1381922062 - - hypothetical protein RCOM_0725510 [Ricinus communis]
6 Hb_158111_010 0.1445961044 - - S-locus-specific glycoprotein precursor, putative [Ricinus communis]
7 Hb_002119_030 0.1540755042 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
8 Hb_002542_030 0.1617518378 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
9 Hb_012404_050 0.1634453055 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
10 Hb_133845_010 0.1685177297 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
11 Hb_167186_010 0.1798066903 - - cation-transporting atpase plant, putative [Ricinus communis]
12 Hb_001846_030 0.1804906692 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
13 Hb_000540_090 0.1821959619 - - PREDICTED: chitinase 2-like [Jatropha curcas]
14 Hb_000086_610 0.18553158 - - PREDICTED: classical arabinogalactan protein 1-like [Populus euphratica]
15 Hb_022137_020 0.1858957099 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
16 Hb_001619_140 0.1890962525 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
17 Hb_001141_200 0.1894336515 - - PREDICTED: LOW QUALITY PROTEIN: parafibromin [Prunus mume]
18 Hb_078171_010 0.1906772369 - - PREDICTED: uncharacterized RING finger protein P8B7.15c-like [Jatropha curcas]
19 Hb_002471_190 0.1910658054 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
20 Hb_034642_010 0.1917891699 - - PREDICTED: zinc finger protein ZAT10-like [Jatropha curcas]

Gene co-expression network

sample Hb_001922_100 Hb_001922_100 Hb_000302_150 Hb_000302_150 Hb_001922_100--Hb_000302_150 Hb_067028_010 Hb_067028_010 Hb_001922_100--Hb_067028_010 Hb_018043_010 Hb_018043_010 Hb_001922_100--Hb_018043_010 Hb_006395_020 Hb_006395_020 Hb_001922_100--Hb_006395_020 Hb_158111_010 Hb_158111_010 Hb_001922_100--Hb_158111_010 Hb_002119_030 Hb_002119_030 Hb_001922_100--Hb_002119_030 Hb_000302_150--Hb_067028_010 Hb_000302_150--Hb_006395_020 Hb_000302_150--Hb_158111_010 Hb_002542_030 Hb_002542_030 Hb_000302_150--Hb_002542_030 Hb_000302_150--Hb_002119_030 Hb_067028_010--Hb_002119_030 Hb_067028_010--Hb_006395_020 Hb_167186_010 Hb_167186_010 Hb_067028_010--Hb_167186_010 Hb_001405_250 Hb_001405_250 Hb_067028_010--Hb_001405_250 Hb_007407_010 Hb_007407_010 Hb_018043_010--Hb_007407_010 Hb_133845_010 Hb_133845_010 Hb_018043_010--Hb_133845_010 Hb_000133_060 Hb_000133_060 Hb_018043_010--Hb_000133_060 Hb_019654_010 Hb_019654_010 Hb_018043_010--Hb_019654_010 Hb_009683_010 Hb_009683_010 Hb_018043_010--Hb_009683_010 Hb_006395_020--Hb_001405_250 Hb_012404_050 Hb_012404_050 Hb_006395_020--Hb_012404_050 Hb_006395_020--Hb_167186_010 Hb_154466_010 Hb_154466_010 Hb_158111_010--Hb_154466_010 Hb_002391_020 Hb_002391_020 Hb_158111_010--Hb_002391_020 Hb_002471_190 Hb_002471_190 Hb_158111_010--Hb_002471_190 Hb_001635_230 Hb_001635_230 Hb_158111_010--Hb_001635_230 Hb_002615_010 Hb_002615_010 Hb_158111_010--Hb_002615_010 Hb_002010_020 Hb_002010_020 Hb_158111_010--Hb_002010_020 Hb_000025_490 Hb_000025_490 Hb_002119_030--Hb_000025_490 Hb_002119_030--Hb_167186_010 Hb_008725_220 Hb_008725_220 Hb_002119_030--Hb_008725_220 Hb_000959_240 Hb_000959_240 Hb_002119_030--Hb_000959_240 Hb_005054_330 Hb_005054_330 Hb_002119_030--Hb_005054_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.280976 0.167626 0.0695209 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0186574 0 0.029704 0

CAGE analysis