Hb_002615_010

Information

Type -
Description -
Location Contig2615: 15965-16609
Sequence    

Annotation

kegg
ID tcc:TCM_040942
description hypothetical protein
nr
ID XP_007015297.1
description Uncharacterized protein TCM_040942 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GTT2
description Uncharacterized protein OS=Theobroma cacao GN=TCM_040942 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002615_010 0.0 - - Uncharacterized protein TCM_040942 [Theobroma cacao]
2 Hb_001635_230 0.0658006361 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
3 Hb_002471_190 0.1140233353 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
4 Hb_002107_110 0.1187556079 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 6 isoform X1 [Jatropha curcas]
5 Hb_158111_010 0.1198098129 - - S-locus-specific glycoprotein precursor, putative [Ricinus communis]
6 Hb_002391_020 0.1201124999 transcription factor TF Family: NAC PREDICTED: putative NAC domain-containing protein 94 [Jatropha curcas]
7 Hb_002010_020 0.1225137084 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
8 Hb_154466_010 0.1281910063 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
9 Hb_005433_030 0.1285678361 transcription factor TF Family: MYB unnamed protein product [Vitis vinifera]
10 Hb_003077_060 0.129747005 - - PREDICTED: 3-oxo-Delta(4,5)-steroid 5-beta-reductase-like [Jatropha curcas]
11 Hb_000552_090 0.1336540683 - - hypothetical protein JCGZ_18511 [Jatropha curcas]
12 Hb_000359_260 0.1360767983 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
13 Hb_092458_010 0.1389583607 - - calmodulin binding protein, putative [Ricinus communis]
14 Hb_001619_020 0.1400138552 - - LRR receptor-like kinase family protein [Medicago truncatula]
15 Hb_000031_160 0.140701965 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
16 Hb_042098_010 0.1480610992 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
17 Hb_055147_010 0.1493565282 - - thioredoxin H-type 7 [Hevea brasiliensis]
18 Hb_017693_040 0.14977069 - - tyrosine kinase family protein [Medicago truncatula]
19 Hb_002374_360 0.149889342 - - hypothetical protein POPTR_0002s08300g [Populus trichocarpa]
20 Hb_000862_060 0.1543794006 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002615_010 Hb_002615_010 Hb_001635_230 Hb_001635_230 Hb_002615_010--Hb_001635_230 Hb_002471_190 Hb_002471_190 Hb_002615_010--Hb_002471_190 Hb_002107_110 Hb_002107_110 Hb_002615_010--Hb_002107_110 Hb_158111_010 Hb_158111_010 Hb_002615_010--Hb_158111_010 Hb_002391_020 Hb_002391_020 Hb_002615_010--Hb_002391_020 Hb_002010_020 Hb_002010_020 Hb_002615_010--Hb_002010_020 Hb_001635_230--Hb_002471_190 Hb_017693_040 Hb_017693_040 Hb_001635_230--Hb_017693_040 Hb_000359_260 Hb_000359_260 Hb_001635_230--Hb_000359_260 Hb_001619_020 Hb_001619_020 Hb_001635_230--Hb_001619_020 Hb_001635_230--Hb_158111_010 Hb_154466_010 Hb_154466_010 Hb_002471_190--Hb_154466_010 Hb_002471_190--Hb_002010_020 Hb_000087_200 Hb_000087_200 Hb_002471_190--Hb_000087_200 Hb_004109_240 Hb_004109_240 Hb_002471_190--Hb_004109_240 Hb_002471_190--Hb_158111_010 Hb_003077_060 Hb_003077_060 Hb_002107_110--Hb_003077_060 Hb_002107_110--Hb_000359_260 Hb_092458_010 Hb_092458_010 Hb_002107_110--Hb_092458_010 Hb_000495_050 Hb_000495_050 Hb_002107_110--Hb_000495_050 Hb_002107_110--Hb_001635_230 Hb_158111_010--Hb_154466_010 Hb_158111_010--Hb_002391_020 Hb_158111_010--Hb_002010_020 Hb_002391_020--Hb_154466_010 Hb_002391_020--Hb_002010_020 Hb_003119_030 Hb_003119_030 Hb_002391_020--Hb_003119_030 Hb_002391_020--Hb_002471_190 Hb_001619_140 Hb_001619_140 Hb_002391_020--Hb_001619_140 Hb_002010_020--Hb_154466_010 Hb_008202_020 Hb_008202_020 Hb_002010_020--Hb_008202_020 Hb_004899_360 Hb_004899_360 Hb_002010_020--Hb_004899_360 Hb_002010_020--Hb_001619_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.17379 6.55788 1.47874 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.56642 0.558767

CAGE analysis