Hb_001619_020

Information

Type -
Description -
Location Contig1619: 23508-44934
Sequence    

Annotation

kegg
ID mus:103984749
description probable leucine-rich repeat receptor-like protein kinase At1g35710
nr
ID KEH41002.1
description LRR receptor-like kinase family protein [Medicago truncatula]
swissprot
ID Q8VZG8
description Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=2 SV=3
trembl
ID A0A072VGS7
description LRR receptor-like kinase family protein OS=Medicago truncatula GN=MTR_1g040615 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14523: 43028-43464
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001619_020 0.0 - - LRR receptor-like kinase family protein [Medicago truncatula]
2 Hb_005867_030 0.0856854386 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
3 Hb_000031_160 0.0907850022 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
4 Hb_001635_230 0.1072723462 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_000237_070 0.115701487 - - Purple acid phosphatase precursor, putative [Ricinus communis]
6 Hb_005463_070 0.1164446866 - - calcium ion binding protein, putative [Ricinus communis]
7 Hb_005628_050 0.1180520796 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
8 Hb_003077_060 0.1182425491 - - PREDICTED: 3-oxo-Delta(4,5)-steroid 5-beta-reductase-like [Jatropha curcas]
9 Hb_009476_070 0.1210160881 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
10 Hb_000382_030 0.1253395997 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
11 Hb_000495_050 0.1275113541 - - hypothetical protein JCGZ_25174 [Jatropha curcas]
12 Hb_177215_020 0.1282300598 - - acc synthase, putative [Ricinus communis]
13 Hb_002107_110 0.1293545055 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 6 isoform X1 [Jatropha curcas]
14 Hb_000318_050 0.1300323043 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
15 Hb_002774_180 0.1329557376 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
16 Hb_005814_010 0.1344076584 - - ATP binding protein, putative [Ricinus communis]
17 Hb_000359_260 0.1347285205 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
18 Hb_001377_130 0.1350455398 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
19 Hb_000417_120 0.1367409886 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
20 Hb_138086_010 0.1375482276 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001619_020 Hb_001619_020 Hb_005867_030 Hb_005867_030 Hb_001619_020--Hb_005867_030 Hb_000031_160 Hb_000031_160 Hb_001619_020--Hb_000031_160 Hb_001635_230 Hb_001635_230 Hb_001619_020--Hb_001635_230 Hb_000237_070 Hb_000237_070 Hb_001619_020--Hb_000237_070 Hb_005463_070 Hb_005463_070 Hb_001619_020--Hb_005463_070 Hb_005628_050 Hb_005628_050 Hb_001619_020--Hb_005628_050 Hb_005867_030--Hb_000237_070 Hb_005867_030--Hb_005463_070 Hb_003077_060 Hb_003077_060 Hb_005867_030--Hb_003077_060 Hb_000495_050 Hb_000495_050 Hb_005867_030--Hb_000495_050 Hb_000318_050 Hb_000318_050 Hb_005867_030--Hb_000318_050 Hb_000031_160--Hb_005628_050 Hb_001141_210 Hb_001141_210 Hb_000031_160--Hb_001141_210 Hb_005814_010 Hb_005814_010 Hb_000031_160--Hb_005814_010 Hb_004785_160 Hb_004785_160 Hb_000031_160--Hb_004785_160 Hb_000031_160--Hb_001635_230 Hb_002615_010 Hb_002615_010 Hb_001635_230--Hb_002615_010 Hb_002471_190 Hb_002471_190 Hb_001635_230--Hb_002471_190 Hb_017693_040 Hb_017693_040 Hb_001635_230--Hb_017693_040 Hb_000359_260 Hb_000359_260 Hb_001635_230--Hb_000359_260 Hb_158111_010 Hb_158111_010 Hb_001635_230--Hb_158111_010 Hb_031862_020 Hb_031862_020 Hb_000237_070--Hb_031862_020 Hb_000382_030 Hb_000382_030 Hb_000237_070--Hb_000382_030 Hb_167272_010 Hb_167272_010 Hb_000237_070--Hb_167272_010 Hb_000237_070--Hb_000318_050 Hb_001377_130 Hb_001377_130 Hb_000237_070--Hb_001377_130 Hb_005463_070--Hb_000318_050 Hb_002010_100 Hb_002010_100 Hb_005463_070--Hb_002010_100 Hb_005016_080 Hb_005016_080 Hb_005463_070--Hb_005016_080 Hb_003387_080 Hb_003387_080 Hb_005463_070--Hb_003387_080 Hb_002361_010 Hb_002361_010 Hb_005463_070--Hb_002361_010 Hb_001832_240 Hb_001832_240 Hb_005628_050--Hb_001832_240 Hb_005628_050--Hb_000382_030 Hb_005628_050--Hb_001377_130 Hb_000598_020 Hb_000598_020 Hb_005628_050--Hb_000598_020 Hb_000417_120 Hb_000417_120 Hb_005628_050--Hb_000417_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.19059 1.1095 0.532605 0 0.00529423
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0104289 0.457574 0.221181

CAGE analysis