Hb_000417_120

Information

Type -
Description -
Location Contig417: 87985-90764
Sequence    

Annotation

kegg
ID rcu:RCOM_1250070
description receptor kinase, putative
nr
ID XP_012091794.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
swissprot
ID C0LGK9
description Probable LRR receptor-like serine/threonine-protein kinase At2g24230 OS=Arabidopsis thaliana GN=At2g24230 PE=2 SV=1
trembl
ID A0A067JBC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21582 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at2g24230

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41231: 87915-91139 , PASA_asmbl_41232: 89576-90111
cDNA
(Sanger)
(ID:Location)		 010_J13.ab1: 89340-90652

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000417_120 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
2 Hb_000771_030 0.0734108854 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
3 Hb_000598_020 0.0772741326 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
4 Hb_065230_010 0.0941217446 - - PREDICTED: uncharacterized protein LOC100814166 isoform X1 [Glycine max]
5 Hb_000382_030 0.0995264533 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
6 Hb_000237_070 0.1010053684 - - Purple acid phosphatase precursor, putative [Ricinus communis]
7 Hb_000075_110 0.1062202159 - - aldo-keto reductase, putative [Ricinus communis]
8 Hb_000098_250 0.1095552588 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
9 Hb_131662_010 0.1105421396 - - Insulin-degrading enzyme, putative [Ricinus communis]
10 Hb_005628_050 0.1142310755 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
11 Hb_007765_140 0.1173931459 - - PREDICTED: protein NRT1/ PTR FAMILY 8.1-like [Jatropha curcas]
12 Hb_031862_020 0.1179952438 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
13 Hb_001377_130 0.1194550773 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
14 Hb_075449_040 0.1200973079 - - PREDICTED: meiotic recombination protein SPO11-1 [Jatropha curcas]
15 Hb_165404_010 0.1226315671 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
16 Hb_000031_160 0.1241404377 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
17 Hb_003680_250 0.1316535022 - - PREDICTED: probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial isoform X2 [Jatropha curcas]
18 Hb_000092_080 0.132308794 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_038742 [Vitis vinifera]
19 Hb_000085_220 0.1327238685 - - conserved hypothetical protein [Ricinus communis]
20 Hb_167272_010 0.1327362845 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]

Gene co-expression network

sample Hb_000417_120 Hb_000417_120 Hb_000771_030 Hb_000771_030 Hb_000417_120--Hb_000771_030 Hb_000598_020 Hb_000598_020 Hb_000417_120--Hb_000598_020 Hb_065230_010 Hb_065230_010 Hb_000417_120--Hb_065230_010 Hb_000382_030 Hb_000382_030 Hb_000417_120--Hb_000382_030 Hb_000237_070 Hb_000237_070 Hb_000417_120--Hb_000237_070 Hb_000075_110 Hb_000075_110 Hb_000417_120--Hb_000075_110 Hb_000771_030--Hb_065230_010 Hb_131662_010 Hb_131662_010 Hb_000771_030--Hb_131662_010 Hb_000098_250 Hb_000098_250 Hb_000771_030--Hb_000098_250 Hb_000771_030--Hb_000598_020 Hb_002410_010 Hb_002410_010 Hb_000771_030--Hb_002410_010 Hb_000598_020--Hb_000075_110 Hb_000110_030 Hb_000110_030 Hb_000598_020--Hb_000110_030 Hb_165404_010 Hb_165404_010 Hb_000598_020--Hb_165404_010 Hb_005628_050 Hb_005628_050 Hb_000598_020--Hb_005628_050 Hb_065230_010--Hb_131662_010 Hb_065230_010--Hb_002410_010 Hb_065230_010--Hb_000098_250 Hb_020648_020 Hb_020648_020 Hb_065230_010--Hb_020648_020 Hb_001377_130 Hb_001377_130 Hb_000382_030--Hb_001377_130 Hb_000382_030--Hb_000237_070 Hb_000318_050 Hb_000318_050 Hb_000382_030--Hb_000318_050 Hb_000085_220 Hb_000085_220 Hb_000382_030--Hb_000085_220 Hb_031862_020 Hb_031862_020 Hb_000382_030--Hb_031862_020 Hb_001123_170 Hb_001123_170 Hb_000382_030--Hb_001123_170 Hb_000237_070--Hb_031862_020 Hb_167272_010 Hb_167272_010 Hb_000237_070--Hb_167272_010 Hb_005867_030 Hb_005867_030 Hb_000237_070--Hb_005867_030 Hb_000237_070--Hb_000318_050 Hb_000237_070--Hb_001377_130 Hb_000075_110--Hb_165404_010 Hb_007765_140 Hb_007765_140 Hb_000075_110--Hb_007765_140 Hb_000120_070 Hb_000120_070 Hb_000075_110--Hb_000120_070 Hb_008215_010 Hb_008215_010 Hb_000075_110--Hb_008215_010 Hb_006970_150 Hb_006970_150 Hb_000075_110--Hb_006970_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0863522 59.0308 30.9231 23.6068 0.0631577 0.0935744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0219003 0.0689277 0 31.1989 8.23679

CAGE analysis