Hb_008215_010

Information

Type -
Description -
Location Contig8215: 24638-27022
Sequence    

Annotation

kegg
ID rcu:RCOM_1501300
description hypothetical protein
nr
ID XP_002511001.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R9X6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1501300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59610: 24399-26247
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008215_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000836_390 0.0758656956 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
3 Hb_007765_140 0.0841215825 - - PREDICTED: protein NRT1/ PTR FAMILY 8.1-like [Jatropha curcas]
4 Hb_000120_070 0.0939600947 - - PREDICTED: uncharacterized protein LOC105630351 [Jatropha curcas]
5 Hb_000075_110 0.1020624071 - - aldo-keto reductase, putative [Ricinus communis]
6 Hb_000046_590 0.104286723 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
7 Hb_165404_010 0.1091300415 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
8 Hb_162286_030 0.129834962 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
9 Hb_000598_020 0.1313854412 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
10 Hb_075449_040 0.1317301069 - - PREDICTED: meiotic recombination protein SPO11-1 [Jatropha curcas]
11 Hb_000359_280 0.1334106302 - - hypothetical protein OsI_15300 [Oryza sativa Indica Group]
12 Hb_001102_270 0.1355213447 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
13 Hb_000914_130 0.137561089 - - copper-transporting atpase p-type, putative [Ricinus communis]
14 Hb_000009_130 0.1408765887 - - hypothetical protein POPTR_0007s12410g [Populus trichocarpa]
15 Hb_000771_030 0.1412027144 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
16 Hb_000417_120 0.1426779914 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
17 Hb_000720_110 0.1448327408 - - hypothetical protein JCGZ_20628 [Jatropha curcas]
18 Hb_001621_020 0.1460286938 - - -
19 Hb_168068_010 0.1479255226 - - Disease resistance protein RFL1, putative [Ricinus communis]
20 Hb_002236_070 0.1494409683 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]

Gene co-expression network

sample Hb_008215_010 Hb_008215_010 Hb_000836_390 Hb_000836_390 Hb_008215_010--Hb_000836_390 Hb_007765_140 Hb_007765_140 Hb_008215_010--Hb_007765_140 Hb_000120_070 Hb_000120_070 Hb_008215_010--Hb_000120_070 Hb_000075_110 Hb_000075_110 Hb_008215_010--Hb_000075_110 Hb_000046_590 Hb_000046_590 Hb_008215_010--Hb_000046_590 Hb_165404_010 Hb_165404_010 Hb_008215_010--Hb_165404_010 Hb_000836_390--Hb_007765_140 Hb_000836_390--Hb_000120_070 Hb_075449_040 Hb_075449_040 Hb_000836_390--Hb_075449_040 Hb_003376_200 Hb_003376_200 Hb_000836_390--Hb_003376_200 Hb_000836_390--Hb_000075_110 Hb_007765_140--Hb_165404_010 Hb_007765_140--Hb_000075_110 Hb_007765_140--Hb_075449_040 Hb_007765_140--Hb_000120_070 Hb_000120_070--Hb_000075_110 Hb_003556_070 Hb_003556_070 Hb_000120_070--Hb_003556_070 Hb_006970_150 Hb_006970_150 Hb_000120_070--Hb_006970_150 Hb_000075_110--Hb_165404_010 Hb_000598_020 Hb_000598_020 Hb_000075_110--Hb_000598_020 Hb_000075_110--Hb_006970_150 Hb_001832_240 Hb_001832_240 Hb_000046_590--Hb_001832_240 Hb_000046_590--Hb_000598_020 Hb_008080_030 Hb_008080_030 Hb_000046_590--Hb_008080_030 Hb_000046_590--Hb_007765_140 Hb_187991_010 Hb_187991_010 Hb_000046_590--Hb_187991_010 Hb_065230_010 Hb_065230_010 Hb_165404_010--Hb_065230_010 Hb_165404_010--Hb_075449_040 Hb_165404_010--Hb_000120_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0882245 57.5871 28.2417 20.9888 0.0483688 0.0523531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.191943 0.241585 0.900902 54.6934 4.26047

CAGE analysis