Hb_008080_030

Information

Type -
Description -
Location Contig8080: 83792-86610
Sequence    

Annotation

kegg
ID pop:POPTR_0275s002101
description hypothetical protein
nr
ID XP_006388225.1
description hypothetical protein POPTR_0275s002101g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U7DY37
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0275s002101g PE=4 SV=1
Gene Ontology
ID GO:0004672
description proline-rich receptor-like protein kinase perk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59122: 83769-96939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008080_030 0.0 - - hypothetical protein POPTR_0275s002101g, partial [Populus trichocarpa]
2 Hb_001832_240 0.104548833 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
3 Hb_002157_100 0.1152157498 - - -
4 Hb_000046_590 0.124969875 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
5 Hb_042098_010 0.1259708022 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
6 Hb_004703_010 0.1287851434 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
7 Hb_003413_020 0.1347511607 - - -
8 Hb_005628_050 0.1396378265 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
9 Hb_006262_030 0.1401292742 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
10 Hb_002045_260 0.14143873 - - calmodulin, putative [Ricinus communis]
11 Hb_000862_060 0.1423451384 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002374_360 0.1469898767 - - hypothetical protein POPTR_0002s08300g [Populus trichocarpa]
13 Hb_003751_050 0.1501985771 - - PREDICTED: amino acid permease 4-like [Jatropha curcas]
14 Hb_001318_110 0.1601785274 - - PREDICTED: uncharacterized protein LOC105642677 [Jatropha curcas]
15 Hb_002871_050 0.163087546 transcription factor TF Family: ARF auxin response factor 1 family protein [Populus trichocarpa]
16 Hb_001454_290 0.1654763658 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
17 Hb_002774_180 0.1659939871 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
18 Hb_002110_060 0.1707050378 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
19 Hb_000001_010 0.1731370858 - - PREDICTED: uncharacterized protein LOC105648961 [Jatropha curcas]
20 Hb_004785_160 0.1757359946 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]

Gene co-expression network

sample Hb_008080_030 Hb_008080_030 Hb_001832_240 Hb_001832_240 Hb_008080_030--Hb_001832_240 Hb_002157_100 Hb_002157_100 Hb_008080_030--Hb_002157_100 Hb_000046_590 Hb_000046_590 Hb_008080_030--Hb_000046_590 Hb_042098_010 Hb_042098_010 Hb_008080_030--Hb_042098_010 Hb_004703_010 Hb_004703_010 Hb_008080_030--Hb_004703_010 Hb_003413_020 Hb_003413_020 Hb_008080_030--Hb_003413_020 Hb_005628_050 Hb_005628_050 Hb_001832_240--Hb_005628_050 Hb_002871_050 Hb_002871_050 Hb_001832_240--Hb_002871_050 Hb_001832_240--Hb_000046_590 Hb_001454_290 Hb_001454_290 Hb_001832_240--Hb_001454_290 Hb_003881_020 Hb_003881_020 Hb_001832_240--Hb_003881_020 Hb_002157_100--Hb_003413_020 Hb_000862_060 Hb_000862_060 Hb_002157_100--Hb_000862_060 Hb_002045_260 Hb_002045_260 Hb_002157_100--Hb_002045_260 Hb_007017_110 Hb_007017_110 Hb_002157_100--Hb_007017_110 Hb_002374_360 Hb_002374_360 Hb_002157_100--Hb_002374_360 Hb_008215_010 Hb_008215_010 Hb_000046_590--Hb_008215_010 Hb_000598_020 Hb_000598_020 Hb_000046_590--Hb_000598_020 Hb_007765_140 Hb_007765_140 Hb_000046_590--Hb_007765_140 Hb_187991_010 Hb_187991_010 Hb_000046_590--Hb_187991_010 Hb_001581_040 Hb_001581_040 Hb_042098_010--Hb_001581_040 Hb_042098_010--Hb_002045_260 Hb_042098_010--Hb_005628_050 Hb_000001_010 Hb_000001_010 Hb_042098_010--Hb_000001_010 Hb_002774_180 Hb_002774_180 Hb_042098_010--Hb_002774_180 Hb_001532_060 Hb_001532_060 Hb_004703_010--Hb_001532_060 Hb_006262_030 Hb_006262_030 Hb_004703_010--Hb_006262_030 Hb_004703_010--Hb_003413_020 Hb_002110_060 Hb_002110_060 Hb_004703_010--Hb_002110_060 Hb_004703_010--Hb_002157_100 Hb_001288_020 Hb_001288_020 Hb_003413_020--Hb_001288_020 Hb_001922_020 Hb_001922_020 Hb_003413_020--Hb_001922_020 Hb_001005_170 Hb_001005_170 Hb_003413_020--Hb_001005_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.228525 9.58177 14.157 4.57949 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 9.67092 0.585838

CAGE analysis