Hb_007017_110

Information

Type -
Description -
Location Contig7017: 126715-127829
Sequence    

Annotation

kegg
ID pop:POPTR_0010s04940g
description POPTRDRAFT_566083; hypothetical protein
nr
ID XP_012092456.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JBV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21728 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54895: 127732-127892
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007017_110 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
2 Hb_002157_100 0.1229336072 - - -
3 Hb_002045_260 0.1406316974 - - calmodulin, putative [Ricinus communis]
4 Hb_000656_120 0.1588056056 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
5 Hb_004703_010 0.159215414 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
6 Hb_007654_010 0.1665356175 - - valacyclovir hydrolase, putative [Ricinus communis]
7 Hb_001005_170 0.1747384817 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
8 Hb_001532_060 0.1798227147 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
9 Hb_003413_020 0.1837234899 - - -
10 Hb_006262_030 0.1853765945 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
11 Hb_002805_260 0.1893063279 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001288_020 0.1913590376 - - -
13 Hb_150745_010 0.1950777447 - - hypothetical protein JCGZ_17337 [Jatropha curcas]
14 Hb_008080_030 0.1998263334 - - hypothetical protein POPTR_0275s002101g, partial [Populus trichocarpa]
15 Hb_006294_030 0.2034161935 - - alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_001159_220 0.2055796624 - - ESC, putative [Ricinus communis]
17 Hb_002374_360 0.2091912291 - - hypothetical protein POPTR_0002s08300g [Populus trichocarpa]
18 Hb_000862_060 0.2120250149 - - conserved hypothetical protein [Ricinus communis]
19 Hb_142734_020 0.2123114956 - - PREDICTED: uncharacterized protein LOC105764710 isoform X1 [Gossypium raimondii]
20 Hb_004316_160 0.2139070117 - - hypothetical protein CISIN_1g047906mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_007017_110 Hb_007017_110 Hb_002157_100 Hb_002157_100 Hb_007017_110--Hb_002157_100 Hb_002045_260 Hb_002045_260 Hb_007017_110--Hb_002045_260 Hb_000656_120 Hb_000656_120 Hb_007017_110--Hb_000656_120 Hb_004703_010 Hb_004703_010 Hb_007017_110--Hb_004703_010 Hb_007654_010 Hb_007654_010 Hb_007017_110--Hb_007654_010 Hb_001005_170 Hb_001005_170 Hb_007017_110--Hb_001005_170 Hb_003413_020 Hb_003413_020 Hb_002157_100--Hb_003413_020 Hb_000862_060 Hb_000862_060 Hb_002157_100--Hb_000862_060 Hb_002157_100--Hb_002045_260 Hb_008080_030 Hb_008080_030 Hb_002157_100--Hb_008080_030 Hb_002374_360 Hb_002374_360 Hb_002157_100--Hb_002374_360 Hb_006262_030 Hb_006262_030 Hb_002045_260--Hb_006262_030 Hb_042098_010 Hb_042098_010 Hb_002045_260--Hb_042098_010 Hb_002045_260--Hb_000656_120 Hb_002045_260--Hb_002374_360 Hb_000483_050 Hb_000483_050 Hb_000656_120--Hb_000483_050 Hb_150745_010 Hb_150745_010 Hb_000656_120--Hb_150745_010 Hb_011849_030 Hb_011849_030 Hb_000656_120--Hb_011849_030 Hb_001159_220 Hb_001159_220 Hb_000656_120--Hb_001159_220 Hb_000656_120--Hb_001005_170 Hb_001532_060 Hb_001532_060 Hb_004703_010--Hb_001532_060 Hb_004703_010--Hb_006262_030 Hb_004703_010--Hb_008080_030 Hb_004703_010--Hb_003413_020 Hb_002110_060 Hb_002110_060 Hb_004703_010--Hb_002110_060 Hb_004703_010--Hb_002157_100 Hb_002805_260 Hb_002805_260 Hb_007654_010--Hb_002805_260 Hb_007645_110 Hb_007645_110 Hb_007654_010--Hb_007645_110 Hb_007451_080 Hb_007451_080 Hb_007654_010--Hb_007451_080 Hb_004316_160 Hb_004316_160 Hb_007654_010--Hb_004316_160 Hb_007951_080 Hb_007951_080 Hb_007654_010--Hb_007951_080 Hb_001288_020 Hb_001288_020 Hb_001005_170--Hb_001288_020 Hb_001862_160 Hb_001862_160 Hb_001005_170--Hb_001862_160 Hb_004096_010 Hb_004096_010 Hb_001005_170--Hb_004096_010 Hb_001005_170--Hb_003413_020 Hb_000563_180 Hb_000563_180 Hb_001005_170--Hb_000563_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.134691 0.563187 0.0797917 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.249432 0

CAGE analysis