Hb_004316_160

Information

Type -
Description -
Location Contig4316: 107567-109656
Sequence    

Annotation

kegg
ID pop:POPTR_0008s17510g
description hypothetical protein
nr
ID KDO46804.1
description hypothetical protein CISIN_1g047906mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DUY3
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g047906mg PE=4 SV=1
Gene Ontology
ID GO:0016829
description probable glutathione s-transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004316_160 0.0 - - hypothetical protein CISIN_1g047906mg, partial [Citrus sinensis]
2 Hb_000471_030 0.1022420196 - - -
3 Hb_006294_030 0.1362267335 - - alcohol dehydrogenase, putative [Ricinus communis]
4 Hb_012691_010 0.168119988 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
5 Hb_001476_030 0.1710899304 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
6 Hb_007654_010 0.1892379171 - - valacyclovir hydrolase, putative [Ricinus communis]
7 Hb_068804_070 0.1904487116 - - hypothetical protein JCGZ_12627 [Jatropha curcas]
8 Hb_000010_150 0.1908282509 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Jatropha curcas]
9 Hb_002984_040 0.2020066867 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_007951_020 0.2024818514 - - cationic amino acid transporter 5 family protein [Populus trichocarpa]
11 Hb_004316_080 0.2042653885 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
12 Hb_005743_010 0.2043619321 - - RING/U-box superfamily protein, putative [Theobroma cacao]
13 Hb_001634_030 0.2093870337 - - Receptor like protein 1, putative [Theobroma cacao]
14 Hb_007017_110 0.2139070117 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
15 Hb_002805_260 0.2227768971 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004703_010 0.22707352 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
17 Hb_000431_140 0.2281275026 - - PREDICTED: acetolactate synthase 1, chloroplastic-like [Vitis vinifera]
18 Hb_007643_060 0.2313784327 - - -
19 Hb_007645_110 0.2315037258 transcription factor TF Family: ERF hypothetical protein RCOM_0089590 [Ricinus communis]
20 Hb_001532_060 0.2324412142 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004316_160 Hb_004316_160 Hb_000471_030 Hb_000471_030 Hb_004316_160--Hb_000471_030 Hb_006294_030 Hb_006294_030 Hb_004316_160--Hb_006294_030 Hb_012691_010 Hb_012691_010 Hb_004316_160--Hb_012691_010 Hb_001476_030 Hb_001476_030 Hb_004316_160--Hb_001476_030 Hb_007654_010 Hb_007654_010 Hb_004316_160--Hb_007654_010 Hb_068804_070 Hb_068804_070 Hb_004316_160--Hb_068804_070 Hb_000471_030--Hb_006294_030 Hb_000471_030--Hb_012691_010 Hb_000471_030--Hb_068804_070 Hb_005743_010 Hb_005743_010 Hb_000471_030--Hb_005743_010 Hb_001634_030 Hb_001634_030 Hb_000471_030--Hb_001634_030 Hb_006294_030--Hb_012691_010 Hb_006294_030--Hb_001634_030 Hb_005834_050 Hb_005834_050 Hb_006294_030--Hb_005834_050 Hb_006294_030--Hb_068804_070 Hb_002984_040 Hb_002984_040 Hb_006294_030--Hb_002984_040 Hb_007643_060 Hb_007643_060 Hb_012691_010--Hb_007643_060 Hb_012691_010--Hb_005834_050 Hb_007951_020 Hb_007951_020 Hb_012691_010--Hb_007951_020 Hb_012691_010--Hb_005743_010 Hb_004316_080 Hb_004316_080 Hb_001476_030--Hb_004316_080 Hb_001476_030--Hb_007951_020 Hb_006316_090 Hb_006316_090 Hb_001476_030--Hb_006316_090 Hb_000358_010 Hb_000358_010 Hb_001476_030--Hb_000358_010 Hb_000103_460 Hb_000103_460 Hb_001476_030--Hb_000103_460 Hb_001769_150 Hb_001769_150 Hb_001476_030--Hb_001769_150 Hb_002805_260 Hb_002805_260 Hb_007654_010--Hb_002805_260 Hb_007645_110 Hb_007645_110 Hb_007654_010--Hb_007645_110 Hb_007017_110 Hb_007017_110 Hb_007654_010--Hb_007017_110 Hb_007451_080 Hb_007451_080 Hb_007654_010--Hb_007451_080 Hb_007951_080 Hb_007951_080 Hb_007654_010--Hb_007951_080 Hb_068804_070--Hb_005743_010 Hb_003592_060 Hb_003592_060 Hb_068804_070--Hb_003592_060 Hb_006266_010 Hb_006266_010 Hb_068804_070--Hb_006266_010 Hb_068804_070--Hb_004316_080 Hb_002217_060 Hb_002217_060 Hb_068804_070--Hb_002217_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0517067 19.4811 155.204 6.29171 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.130913 64.8121 14.7832

CAGE analysis