Hb_006294_030

Information

Type -
Description -
Location Contig6294: 46506-47872
Sequence    

Annotation

kegg
ID rcu:RCOM_0366700
description alcohol dehydrogenase, putative (EC:1.1.1.255)
nr
ID XP_002534286.1
description alcohol dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9ZRF1
description Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1
trembl
ID B9T7R7
description Alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_0366700 PE=3 SV=1
Gene Ontology
ID GO:0008270
description probable mannitol dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006294_030 0.0 - - alcohol dehydrogenase, putative [Ricinus communis]
2 Hb_000471_030 0.0620741966 - - -
3 Hb_012691_010 0.0882590669 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
4 Hb_001634_030 0.1198372955 - - Receptor like protein 1, putative [Theobroma cacao]
5 Hb_005834_050 0.1253515759 - - PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]
6 Hb_068804_070 0.1275233809 - - hypothetical protein JCGZ_12627 [Jatropha curcas]
7 Hb_002984_040 0.1287632817 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_005743_010 0.1344350395 - - RING/U-box superfamily protein, putative [Theobroma cacao]
9 Hb_004316_160 0.1362267335 - - hypothetical protein CISIN_1g047906mg, partial [Citrus sinensis]
10 Hb_137272_010 0.1414237084 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
11 Hb_000010_150 0.1450844261 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Jatropha curcas]
12 Hb_001918_030 0.1503747351 - - -
13 Hb_006266_010 0.1508661157 - - unnamed protein product [Vitis vinifera]
14 Hb_000567_060 0.1558719251 - - PREDICTED: U-box domain-containing protein 7 [Jatropha curcas]
15 Hb_007951_020 0.1570454543 - - cationic amino acid transporter 5 family protein [Populus trichocarpa]
16 Hb_002995_010 0.159877087 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
17 Hb_003881_020 0.1614776767 - - PREDICTED: stellacyanin-like [Jatropha curcas]
18 Hb_007643_060 0.1630957722 - - -
19 Hb_000501_110 0.164921704 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [Populus euphratica]
20 Hb_001159_220 0.1665400346 - - ESC, putative [Ricinus communis]

Gene co-expression network

sample Hb_006294_030 Hb_006294_030 Hb_000471_030 Hb_000471_030 Hb_006294_030--Hb_000471_030 Hb_012691_010 Hb_012691_010 Hb_006294_030--Hb_012691_010 Hb_001634_030 Hb_001634_030 Hb_006294_030--Hb_001634_030 Hb_005834_050 Hb_005834_050 Hb_006294_030--Hb_005834_050 Hb_068804_070 Hb_068804_070 Hb_006294_030--Hb_068804_070 Hb_002984_040 Hb_002984_040 Hb_006294_030--Hb_002984_040 Hb_000471_030--Hb_012691_010 Hb_004316_160 Hb_004316_160 Hb_000471_030--Hb_004316_160 Hb_000471_030--Hb_068804_070 Hb_005743_010 Hb_005743_010 Hb_000471_030--Hb_005743_010 Hb_000471_030--Hb_001634_030 Hb_007643_060 Hb_007643_060 Hb_012691_010--Hb_007643_060 Hb_012691_010--Hb_005834_050 Hb_007951_020 Hb_007951_020 Hb_012691_010--Hb_007951_020 Hb_012691_010--Hb_005743_010 Hb_004551_050 Hb_004551_050 Hb_001634_030--Hb_004551_050 Hb_137272_010 Hb_137272_010 Hb_001634_030--Hb_137272_010 Hb_000567_060 Hb_000567_060 Hb_001634_030--Hb_000567_060 Hb_001634_030--Hb_068804_070 Hb_003881_020 Hb_003881_020 Hb_001634_030--Hb_003881_020 Hb_002995_010 Hb_002995_010 Hb_005834_050--Hb_002995_010 Hb_001776_130 Hb_001776_130 Hb_005834_050--Hb_001776_130 Hb_000035_150 Hb_000035_150 Hb_005834_050--Hb_000035_150 Hb_003759_040 Hb_003759_040 Hb_005834_050--Hb_003759_040 Hb_006615_220 Hb_006615_220 Hb_005834_050--Hb_006615_220 Hb_068804_070--Hb_005743_010 Hb_003592_060 Hb_003592_060 Hb_068804_070--Hb_003592_060 Hb_006266_010 Hb_006266_010 Hb_068804_070--Hb_006266_010 Hb_004316_080 Hb_004316_080 Hb_068804_070--Hb_004316_080 Hb_002217_060 Hb_002217_060 Hb_068804_070--Hb_002217_060 Hb_000501_110 Hb_000501_110 Hb_002984_040--Hb_000501_110 Hb_002984_040--Hb_003881_020 Hb_007676_040 Hb_007676_040 Hb_002984_040--Hb_007676_040 Hb_134174_010 Hb_134174_010 Hb_002984_040--Hb_134174_010 Hb_123560_020 Hb_123560_020 Hb_002984_040--Hb_123560_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.375377 1.61481 0.227552 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.630175 0.245802

CAGE analysis