Hb_123560_020

Information

Type -
Description -
Location Contig123560: 21232-26451
Sequence    

Annotation

kegg
ID pxb:103961606
description uncharacterized LOC103961606
nr
ID KDP32003.1
description hypothetical protein JCGZ_12464 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KAF7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12464 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07194: 21575-21799
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123560_020 0.0 - - hypothetical protein JCGZ_12464 [Jatropha curcas]
2 Hb_005168_030 0.0709254884 - - unknown [Zea mays]
3 Hb_106321_010 0.0888566017 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
4 Hb_011440_010 0.0897784154 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
5 Hb_009486_120 0.1036941416 - - hypothetical protein PRUPE_ppa004149mg [Prunus persica]
6 Hb_000336_280 0.1048080807 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
7 Hb_001186_120 0.1227399959 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
8 Hb_001226_100 0.1255810662 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
9 Hb_002984_040 0.1283078872 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_002304_190 0.1306373896 - - PREDICTED: 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase [Jatropha curcas]
11 Hb_001832_110 0.1312888734 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
12 Hb_001358_120 0.1330987435 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
13 Hb_001300_140 0.1335013093 - - -
14 Hb_002685_100 0.1343050715 - - low temperature inducible SLTI66 [Glycine max]
15 Hb_022092_050 0.1343867487 - - PREDICTED: uncharacterized protein LOC105136214 [Populus euphratica]
16 Hb_000215_130 0.1346647648 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
17 Hb_005333_210 0.1360942105 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
18 Hb_000753_180 0.1371840878 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
19 Hb_005614_030 0.1386965106 - - PREDICTED: transcription factor SCREAM2-like isoform X1 [Jatropha curcas]
20 Hb_000018_120 0.1399480052 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_123560_020 Hb_123560_020 Hb_005168_030 Hb_005168_030 Hb_123560_020--Hb_005168_030 Hb_106321_010 Hb_106321_010 Hb_123560_020--Hb_106321_010 Hb_011440_010 Hb_011440_010 Hb_123560_020--Hb_011440_010 Hb_009486_120 Hb_009486_120 Hb_123560_020--Hb_009486_120 Hb_000336_280 Hb_000336_280 Hb_123560_020--Hb_000336_280 Hb_001186_120 Hb_001186_120 Hb_123560_020--Hb_001186_120 Hb_005168_030--Hb_106321_010 Hb_005168_030--Hb_011440_010 Hb_004586_110 Hb_004586_110 Hb_005168_030--Hb_004586_110 Hb_002960_010 Hb_002960_010 Hb_005168_030--Hb_002960_010 Hb_002003_030 Hb_002003_030 Hb_005168_030--Hb_002003_030 Hb_000215_420 Hb_000215_420 Hb_106321_010--Hb_000215_420 Hb_000705_090 Hb_000705_090 Hb_106321_010--Hb_000705_090 Hb_106321_010--Hb_011440_010 Hb_106321_010--Hb_002003_030 Hb_001300_140 Hb_001300_140 Hb_011440_010--Hb_001300_140 Hb_009150_060 Hb_009150_060 Hb_011440_010--Hb_009150_060 Hb_000753_180 Hb_000753_180 Hb_011440_010--Hb_000753_180 Hb_001358_120 Hb_001358_120 Hb_011440_010--Hb_001358_120 Hb_002304_190 Hb_002304_190 Hb_009486_120--Hb_002304_190 Hb_009486_120--Hb_000336_280 Hb_022092_050 Hb_022092_050 Hb_009486_120--Hb_022092_050 Hb_001832_110 Hb_001832_110 Hb_009486_120--Hb_001832_110 Hb_002685_100 Hb_002685_100 Hb_009486_120--Hb_002685_100 Hb_000336_280--Hb_001832_110 Hb_000336_280--Hb_002685_100 Hb_001226_100 Hb_001226_100 Hb_000336_280--Hb_001226_100 Hb_005333_210 Hb_005333_210 Hb_000336_280--Hb_005333_210 Hb_000215_130 Hb_000215_130 Hb_000336_280--Hb_000215_130 Hb_000336_280--Hb_002304_190 Hb_001186_120--Hb_000215_130 Hb_001186_120--Hb_001226_100 Hb_000880_040 Hb_000880_040 Hb_001186_120--Hb_000880_040 Hb_004709_030 Hb_004709_030 Hb_001186_120--Hb_004709_030 Hb_009102_010 Hb_009102_010 Hb_001186_120--Hb_009102_010 Hb_001186_120--Hb_000336_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.143239 0.729632 0.176899 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.883922 0.299222

CAGE analysis