Hb_004709_030

Information

Type -
Description -
Location Contig4709: 35801-38979
Sequence    

Annotation

kegg
ID vvi:100267998
description receptor-like protein 12
nr
ID XP_010665086.1
description PREDICTED: receptor-like protein 12 [Vitis vinifera]
swissprot
ID Q9C9H7
description Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2
trembl
ID A0A061EH08
description Receptor like protein 6, putative OS=Theobroma cacao GN=TCM_019546 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004709_030 0.0 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
2 Hb_000365_440 0.0736732626 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
3 Hb_019278_010 0.0907420987 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
4 Hb_000087_120 0.0928306562 - - AMP dependent CoA ligase, putative [Ricinus communis]
5 Hb_001186_120 0.1051907598 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
6 Hb_026419_010 0.109316897 - - PREDICTED: cyclin-D3-1-like [Jatropha curcas]
7 Hb_170023_010 0.1098063822 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
8 Hb_000215_130 0.1111228329 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
9 Hb_000880_040 0.1248387857 - - -
10 Hb_002379_060 0.1305439239 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
11 Hb_004324_320 0.131771366 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
12 Hb_079394_010 0.1401895997 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
13 Hb_002701_170 0.1427713803 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
14 Hb_001244_070 0.1441094353 - - hypothetical protein POPTR_0004s13470g [Populus trichocarpa]
15 Hb_001226_100 0.1444697125 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
16 Hb_005333_210 0.1449292254 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
17 Hb_005050_030 0.1458375998 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]
18 Hb_002151_150 0.14632459 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
19 Hb_002851_070 0.1471955529 - - PREDICTED: uncharacterized protein LOC105646410 [Jatropha curcas]
20 Hb_000072_110 0.1497908834 - - PREDICTED: U-box domain-containing protein 35 [Jatropha curcas]

Gene co-expression network

sample Hb_004709_030 Hb_004709_030 Hb_000365_440 Hb_000365_440 Hb_004709_030--Hb_000365_440 Hb_019278_010 Hb_019278_010 Hb_004709_030--Hb_019278_010 Hb_000087_120 Hb_000087_120 Hb_004709_030--Hb_000087_120 Hb_001186_120 Hb_001186_120 Hb_004709_030--Hb_001186_120 Hb_026419_010 Hb_026419_010 Hb_004709_030--Hb_026419_010 Hb_170023_010 Hb_170023_010 Hb_004709_030--Hb_170023_010 Hb_000880_040 Hb_000880_040 Hb_000365_440--Hb_000880_040 Hb_001244_070 Hb_001244_070 Hb_000365_440--Hb_001244_070 Hb_000365_440--Hb_170023_010 Hb_005050_030 Hb_005050_030 Hb_000365_440--Hb_005050_030 Hb_000365_440--Hb_019278_010 Hb_019278_010--Hb_170023_010 Hb_019278_010--Hb_000087_120 Hb_000337_030 Hb_000337_030 Hb_019278_010--Hb_000337_030 Hb_002379_060 Hb_002379_060 Hb_019278_010--Hb_002379_060 Hb_000087_120--Hb_002379_060 Hb_000087_120--Hb_170023_010 Hb_004324_320 Hb_004324_320 Hb_000087_120--Hb_004324_320 Hb_000215_130 Hb_000215_130 Hb_000087_120--Hb_000215_130 Hb_001186_120--Hb_000215_130 Hb_001226_100 Hb_001226_100 Hb_001186_120--Hb_001226_100 Hb_001186_120--Hb_000880_040 Hb_009102_010 Hb_009102_010 Hb_001186_120--Hb_009102_010 Hb_000336_280 Hb_000336_280 Hb_001186_120--Hb_000336_280 Hb_000226_110 Hb_000226_110 Hb_026419_010--Hb_000226_110 Hb_026419_010--Hb_019278_010 Hb_026419_010--Hb_000087_120 Hb_026419_010--Hb_000365_440 Hb_000230_020 Hb_000230_020 Hb_026419_010--Hb_000230_020 Hb_170023_010--Hb_004324_320 Hb_170023_010--Hb_000880_040 Hb_170023_010--Hb_001244_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.074859 1.55146 0.566724 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.5827 1.35183

CAGE analysis