Hb_009102_010

Information

Type -
Description -
Location Contig9102: 4257-14099
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID XP_002516046.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID C0LGQ4
description Probable LRR receptor-like serine/threonine-protein kinase MRH1 OS=Arabidopsis thaliana GN=MRH1 PE=2 SV=1
trembl
ID B9RQM7
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494400 PE=3 SV=1
Gene Ontology
ID GO:0044464
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62118: 7909-10639 , PASA_asmbl_62119: 7911-13273 , PASA_asmbl_62121: 13480-14185
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009102_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_001285_020 0.0834813219 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_000260_750 0.0896390702 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
4 Hb_000500_360 0.1023641449 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
5 Hb_000880_040 0.1095702024 - - -
6 Hb_002025_290 0.11365571 transcription factor TF Family: G2-like conserved hypothetical protein [Ricinus communis]
7 Hb_078582_010 0.1153293613 - - hypothetical protein POPTR_0005s01620g [Populus trichocarpa]
8 Hb_001186_120 0.1167477625 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
9 Hb_004324_320 0.1186637318 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
10 Hb_000147_020 0.1192924882 - - PREDICTED: uncharacterized protein LOC105638303 [Jatropha curcas]
11 Hb_006266_010 0.1220375489 - - unnamed protein product [Vitis vinifera]
12 Hb_009693_010 0.1238566097 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Gossypium raimondii]
13 Hb_000020_020 0.1290828436 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
14 Hb_003453_060 0.131807883 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
15 Hb_001500_080 0.132046811 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
16 Hb_001501_020 0.1325637578 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
17 Hb_000189_160 0.1337984855 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
18 Hb_005575_010 0.1374262574 - - hypothetical protein POPTR_0004s02560g [Populus trichocarpa]
19 Hb_003050_010 0.1398222947 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
20 Hb_170023_010 0.1398844935 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]

Gene co-expression network

sample Hb_009102_010 Hb_009102_010 Hb_001285_020 Hb_001285_020 Hb_009102_010--Hb_001285_020 Hb_000260_750 Hb_000260_750 Hb_009102_010--Hb_000260_750 Hb_000500_360 Hb_000500_360 Hb_009102_010--Hb_000500_360 Hb_000880_040 Hb_000880_040 Hb_009102_010--Hb_000880_040 Hb_002025_290 Hb_002025_290 Hb_009102_010--Hb_002025_290 Hb_078582_010 Hb_078582_010 Hb_009102_010--Hb_078582_010 Hb_001285_020--Hb_002025_290 Hb_003050_010 Hb_003050_010 Hb_001285_020--Hb_003050_010 Hb_005575_010 Hb_005575_010 Hb_001285_020--Hb_005575_010 Hb_003453_060 Hb_003453_060 Hb_001285_020--Hb_003453_060 Hb_001285_020--Hb_000500_360 Hb_000260_750--Hb_000880_040 Hb_004324_320 Hb_004324_320 Hb_000260_750--Hb_004324_320 Hb_000260_750--Hb_078582_010 Hb_002601_140 Hb_002601_140 Hb_000260_750--Hb_002601_140 Hb_002078_320 Hb_002078_320 Hb_000260_750--Hb_002078_320 Hb_000147_020 Hb_000147_020 Hb_000500_360--Hb_000147_020 Hb_001501_020 Hb_001501_020 Hb_000500_360--Hb_001501_020 Hb_000049_170 Hb_000049_170 Hb_000500_360--Hb_000049_170 Hb_002845_020 Hb_002845_020 Hb_000500_360--Hb_002845_020 Hb_009693_010 Hb_009693_010 Hb_000880_040--Hb_009693_010 Hb_000365_440 Hb_000365_440 Hb_000880_040--Hb_000365_440 Hb_001244_070 Hb_001244_070 Hb_000880_040--Hb_001244_070 Hb_170023_010 Hb_170023_010 Hb_000880_040--Hb_170023_010 Hb_002851_070 Hb_002851_070 Hb_000880_040--Hb_002851_070 Hb_002025_290--Hb_003453_060 Hb_002025_290--Hb_005575_010 Hb_002025_290--Hb_003050_010 Hb_001544_060 Hb_001544_060 Hb_002025_290--Hb_001544_060 Hb_078582_010--Hb_003453_060 Hb_000037_200 Hb_000037_200 Hb_078582_010--Hb_000037_200 Hb_000759_040 Hb_000759_040 Hb_078582_010--Hb_000759_040 Hb_078582_010--Hb_005575_010 Hb_000987_020 Hb_000987_020 Hb_078582_010--Hb_000987_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.3155 17.1461 3.76936 0 0.00507569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00985258 0 8.93039 12.6848

CAGE analysis