Hb_000147_020

Information

Type -
Description -
Location Contig147: 79483-80451
Sequence    

Annotation

kegg
ID rcu:RCOM_0281750
description hypothetical protein
nr
ID XP_012077488.1
description PREDICTED: uncharacterized protein LOC105638303 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KDT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07818 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11908: 79462-80651
cDNA
(Sanger)
(ID:Location)		 005_L01.ab1: 79462-80288 , 007_J08.ab1: 79462-80227 , 007_P09.ab1: 79462-80232 , 008_E10.ab1: 79462-80196 , 013_D23.ab1: 79462-80066 , 014_E06.ab1: 79462-80178 , 019_P20.ab1: 79462-80274

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000147_020 0.0 - - PREDICTED: uncharacterized protein LOC105638303 [Jatropha curcas]
2 Hb_000500_360 0.0585663207 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
3 Hb_006970_120 0.0850820253 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004324_320 0.0879580551 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
5 Hb_000260_750 0.1068272059 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
6 Hb_000640_330 0.1073726845 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000380_140 0.1141302722 - - PREDICTED: uncharacterized protein LOC105628069 [Jatropha curcas]
8 Hb_170023_010 0.1186174395 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
9 Hb_002701_060 0.1188722129 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002601_140 0.1191534792 - - signal transducer, putative [Ricinus communis]
11 Hb_009102_010 0.1192924882 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_017098_050 0.1199384844 - - hypothetical protein POPTR_0001s03540g [Populus trichocarpa]
13 Hb_000164_110 0.1204317309 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
14 Hb_000776_020 0.1222267521 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]
15 Hb_006827_030 0.1222941821 - - oligopeptide transporter, putative [Ricinus communis]
16 Hb_000049_170 0.122364065 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001579_060 0.1235454919 - - carbonic anhydrase, putative [Ricinus communis]
18 Hb_004946_010 0.1259025564 - - hypothetical protein POPTR_0013s035502g, partial [Populus trichocarpa]
19 Hb_000072_110 0.1263284716 - - PREDICTED: U-box domain-containing protein 35 [Jatropha curcas]
20 Hb_000987_020 0.1279668875 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]

Gene co-expression network

sample Hb_000147_020 Hb_000147_020 Hb_000500_360 Hb_000500_360 Hb_000147_020--Hb_000500_360 Hb_006970_120 Hb_006970_120 Hb_000147_020--Hb_006970_120 Hb_004324_320 Hb_004324_320 Hb_000147_020--Hb_004324_320 Hb_000260_750 Hb_000260_750 Hb_000147_020--Hb_000260_750 Hb_000640_330 Hb_000640_330 Hb_000147_020--Hb_000640_330 Hb_000380_140 Hb_000380_140 Hb_000147_020--Hb_000380_140 Hb_001501_020 Hb_001501_020 Hb_000500_360--Hb_001501_020 Hb_009102_010 Hb_009102_010 Hb_000500_360--Hb_009102_010 Hb_000049_170 Hb_000049_170 Hb_000500_360--Hb_000049_170 Hb_002845_020 Hb_002845_020 Hb_000500_360--Hb_002845_020 Hb_001285_020 Hb_001285_020 Hb_000500_360--Hb_001285_020 Hb_006970_120--Hb_000380_140 Hb_000164_110 Hb_000164_110 Hb_006970_120--Hb_000164_110 Hb_004946_010 Hb_004946_010 Hb_006970_120--Hb_004946_010 Hb_002701_060 Hb_002701_060 Hb_006970_120--Hb_002701_060 Hb_006053_020 Hb_006053_020 Hb_006970_120--Hb_006053_020 Hb_170023_010 Hb_170023_010 Hb_004324_320--Hb_170023_010 Hb_004324_320--Hb_000260_750 Hb_000072_110 Hb_000072_110 Hb_004324_320--Hb_000072_110 Hb_000880_040 Hb_000880_040 Hb_004324_320--Hb_000880_040 Hb_000365_440 Hb_000365_440 Hb_004324_320--Hb_000365_440 Hb_000260_750--Hb_000880_040 Hb_000260_750--Hb_009102_010 Hb_078582_010 Hb_078582_010 Hb_000260_750--Hb_078582_010 Hb_002601_140 Hb_002601_140 Hb_000260_750--Hb_002601_140 Hb_002078_320 Hb_002078_320 Hb_000260_750--Hb_002078_320 Hb_004724_180 Hb_004724_180 Hb_000640_330--Hb_004724_180 Hb_000042_090 Hb_000042_090 Hb_000640_330--Hb_000042_090 Hb_000776_020 Hb_000776_020 Hb_000640_330--Hb_000776_020 Hb_000640_330--Hb_000500_360 Hb_000608_360 Hb_000608_360 Hb_000640_330--Hb_000608_360 Hb_002635_010 Hb_002635_010 Hb_000380_140--Hb_002635_010 Hb_010311_020 Hb_010311_020 Hb_000380_140--Hb_010311_020 Hb_000380_140--Hb_004946_010 Hb_185474_020 Hb_185474_020 Hb_000380_140--Hb_185474_020 Hb_124579_020 Hb_124579_020 Hb_000380_140--Hb_124579_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 12.584 40.1689 14.6417 0 0.0256873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.105423 0.041456 0.0761436 28.6471 58.2983

CAGE analysis