Hb_004946_010

Information

Type -
Description -
Location Contig4946: 282-5560
Sequence    

Annotation

kegg
ID pop:POPTR_0013s035502
description hypothetical protein
nr
ID XP_006375822.1
description hypothetical protein POPTR_0013s035502g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FTX8
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0013s035502g PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at4g08850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004946_010 0.0 - - hypothetical protein POPTR_0013s035502g, partial [Populus trichocarpa]
2 Hb_000901_010 0.0797745026 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Jatropha curcas]
3 Hb_000380_140 0.0808870142 - - PREDICTED: uncharacterized protein LOC105628069 [Jatropha curcas]
4 Hb_006970_120 0.0873317506 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000483_430 0.0888350528 - - -
6 Hb_000987_020 0.0915554424 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
7 Hb_000023_130 0.0978121736 - - Metal-nicotianamine transporter YSL1 [Glycine soja]
8 Hb_002073_150 0.1010050995 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
9 Hb_000680_130 0.1025794374 - - beta-galactosidase, putative [Ricinus communis]
10 Hb_131876_010 0.1028330948 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like isoform X1 [Jatropha curcas]
11 Hb_004855_080 0.1043876847 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
12 Hb_000703_120 0.1050951079 - - PREDICTED: uncharacterized protein LOC105635706 isoform X1 [Jatropha curcas]
13 Hb_002890_200 0.105816057 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
14 Hb_000705_040 0.10678829 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001579_060 0.1068904207 - - carbonic anhydrase, putative [Ricinus communis]
16 Hb_000164_110 0.1084218736 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
17 Hb_067558_010 0.1088194408 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
18 Hb_000041_210 0.1103527386 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]
19 Hb_032695_010 0.1105465674 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Vitis vinifera]
20 Hb_001405_040 0.1105901025 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_004946_010 Hb_004946_010 Hb_000901_010 Hb_000901_010 Hb_004946_010--Hb_000901_010 Hb_000380_140 Hb_000380_140 Hb_004946_010--Hb_000380_140 Hb_006970_120 Hb_006970_120 Hb_004946_010--Hb_006970_120 Hb_000483_430 Hb_000483_430 Hb_004946_010--Hb_000483_430 Hb_000987_020 Hb_000987_020 Hb_004946_010--Hb_000987_020 Hb_000023_130 Hb_000023_130 Hb_004946_010--Hb_000023_130 Hb_002078_320 Hb_002078_320 Hb_000901_010--Hb_002078_320 Hb_000901_010--Hb_000987_020 Hb_020805_070 Hb_020805_070 Hb_000901_010--Hb_020805_070 Hb_004855_080 Hb_004855_080 Hb_000901_010--Hb_004855_080 Hb_000260_750 Hb_000260_750 Hb_000901_010--Hb_000260_750 Hb_000380_140--Hb_006970_120 Hb_002635_010 Hb_002635_010 Hb_000380_140--Hb_002635_010 Hb_010311_020 Hb_010311_020 Hb_000380_140--Hb_010311_020 Hb_185474_020 Hb_185474_020 Hb_000380_140--Hb_185474_020 Hb_124579_020 Hb_124579_020 Hb_000380_140--Hb_124579_020 Hb_000164_110 Hb_000164_110 Hb_006970_120--Hb_000164_110 Hb_000147_020 Hb_000147_020 Hb_006970_120--Hb_000147_020 Hb_002701_060 Hb_002701_060 Hb_006970_120--Hb_002701_060 Hb_006053_020 Hb_006053_020 Hb_006970_120--Hb_006053_020 Hb_011104_020 Hb_011104_020 Hb_000483_430--Hb_011104_020 Hb_002073_150 Hb_002073_150 Hb_000483_430--Hb_002073_150 Hb_012389_010 Hb_012389_010 Hb_000483_430--Hb_012389_010 Hb_000041_210 Hb_000041_210 Hb_000483_430--Hb_000041_210 Hb_004994_030 Hb_004994_030 Hb_000483_430--Hb_004994_030 Hb_000483_430--Hb_000023_130 Hb_001579_060 Hb_001579_060 Hb_000987_020--Hb_001579_060 Hb_000987_020--Hb_002078_320 Hb_000185_170 Hb_000185_170 Hb_000987_020--Hb_000185_170 Hb_000694_050 Hb_000694_050 Hb_000987_020--Hb_000694_050 Hb_000037_200 Hb_000037_200 Hb_000987_020--Hb_000037_200 Hb_000759_040 Hb_000759_040 Hb_000023_130--Hb_000759_040 Hb_001051_010 Hb_001051_010 Hb_000023_130--Hb_001051_010 Hb_132356_010 Hb_132356_010 Hb_000023_130--Hb_132356_010 Hb_009788_020 Hb_009788_020 Hb_000023_130--Hb_009788_020 Hb_000023_130--Hb_000037_200 Hb_001629_120 Hb_001629_120 Hb_000023_130--Hb_001629_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.112816 0.388234 0.256932 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.166114 0.565687

CAGE analysis